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"mean":[33.1387,33.2869,33.221,33.327,33.4056,33.204,33.4316,33.4517,33.4587,33.4398,33.4533,33.4459,33.4711,33.4593,33.4654,33.4653,33.4685,33.4589,33.466,33.4258,33.4688,33.4636,33.4529,33.459,33.4559,33.4947,33.4906,33.4915,33.4895,33.4856,33.485,33.4816,33.4725,33.4761,33.4738,33.4757,33.4735,33.472,33.4662,33.4675,33.4681,33.4306,33.4501,33.3907,33.3233,33.3254,33.4393,33.4446,33.4382,33.4364,33.4041,33.4218,33.4217,33.4244,33.4284,33.4176,33.4149,33.4123,33.2197] }, "content_curves": { 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"CTTTA":196469, "CTTTT":351048, "CTTTC":266229, "CTTTG":244100, "CTTCA":301596, "CTTCT":382782, "CTTCC":298433, "CTTCG":71217, "CTTGA":242684, "CTTGT":200303, "CTTGC":163112, "CTTGG":250277, "CTCAA":197527, "CTCAT":204805, "CTCAC":184896, "CTCAG":284760, "CTCTA":141647, "CTCTT":276218, "CTCTC":270302, "CTCTG":282960, "CTCCA":329251, "CTCCT":406650, "CTCCC":314133, "CTCCG":127175, "CTCGA":65899, "CTCGT":98871, "CTCGC":76242, "CTCGG":114361, "CTGAA":250106, "CTGAT":195190, "CTGAC":136718, "CTGAG":260434, "CTGTA":184653, "CTGTT":220964, "CTGTC":195092, "CTGTG":234832, "CTGCA":242603, "CTGCT":291726, "CTGCC":239996, "CTGCG":72373, "CTGGA":307472, "CTGGT":258659, "CTGGC":228995, "CTGGG":366722, "CCAAA":244392, "CCAAT":138713, "CCAAC":135962, "CCAAG":185268, "CCATA":160411, "CCATT":202444, "CCATC":197729, "CCATG":188953, "CCACA":258343, "CCACT":242547, "CCACC":270707, "CCACG":104375, "CCAGA":219392, "CCAGT":211029, "CCAGC":286572, "CCAGG":361372, "CCTAA":99544, "CCTAT":93055, "CCTAC":116163, 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"CGTAG":46005, "CGTTA":28683, "CGTTT":77258, "CGTTC":77483, "CGTTG":52233, "CGTCA":56051, "CGTCT":118296, "CGTCC":73889, "CGTCG":40263, "CGTGA":75235, "CGTGT":57576, "CGTGC":55363, "CGTGG":80517, "CGCAA":34567, "CGCAT":33037, "CGCAC":66621, "CGCAG":79045, "CGCTA":35814, "CGCTT":70631, "CGCTC":131440, "CGCTG":75832, "CGCCA":81178, "CGCCT":102870, "CGCCC":97038, "CGCCG":78235, "CGCGA":66443, "CGCGT":33252, "CGCGC":77950, "CGCGG":87079, "CGGAA":74562, "CGGAT":54286, "CGGAC":58410, "CGGAG":101822, "CGGTA":39959, "CGGTT":67667, "CGGTC":73751, "CGGTG":83160, "CGGCA":76445, "CGGCT":82565, "CGGCC":147721, "CGGCG":124639, "CGGGA":162881, "CGGGT":65797, "CGGGC":134820, "CGGGG":186245, "GAAAA":312864, "GAAAT":210075, "GAAAC":158126, "GAAAG":212245, "GAATA":137935, "GAATT":163106, "GAATC":122977, "GAATG":172061, "GAACA":154955, "GAACT":176832, "GAACC":116001, "GAACG":43473, "GAAGA":274000, "GAAGT":169798, "GAAGC":176923, "GAAGG":238444, "GATAA":121404, "GATAT":120617, "GATAC":71823, "GATAG":91110, "GATTA":117786, "GATTT":187204, "GATTC":127641, "GATTG":89919, "GATCA":168286, "GATCT":145078, "GATCC":140570, "GATCG":54426, "GATGA":184779, "GATGT":156483, "GATGC":150166, "GATGG":205776, "GACAA":131730, "GACAT":117443, "GACAC":124884, "GACAG":188794, "GACTA":85172, "GACTT":130549, "GACTC":107383, "GACTG":130693, "GACCA":129277, "GACCT":157190, "GACCC":107418, "GACCG":64353, "GACGA":64333, "GACGT":40331, "GACGC":55600, "GACGG":89307, "GAGAA":247341, "GAGAT":155550, "GAGAC":158588, "GAGAG":229991, "GAGTA":107063, "GAGTT":162379, "GAGTC":134211, "GAGTG":170517, "GAGCA":168514, "GAGCT":175770, "GAGCC":165968, "GAGCG":84407, "GAGGA":246570, "GAGGT":223812, "GAGGC":259552, "GAGGG":266938, "GTAAA":153947, "GTAAT":129546, "GTAAC":84272, "GTAAG":100599, "GTATA":92520, "GTATT":141333, "GTATC":76962, "GTATG":107496, "GTACA":119876, "GTACT":107880, "GTACC":68297, "GTACG":30259, "GTAGA":126536, "GTAGT":117184, "GTAGC":105992, "GTAGG":125284, "GTTAA":114479, "GTTAT":101049, "GTTAC":78678, 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"mean":[33.1106,33.3478,33.181,33.241,33.319,33.2965,33.0672,33.3525,33.3777,33.3327,33.3317,33.3326,33.3479,33.333,33.3353,33.3282,33.3114,33.3174,33.3147,33.2975,33.288,33.2969,33.3021,33.3027,33.2854,33.3503,33.3433,33.3257,33.3197,33.2956,33.3009,33.2847,33.2698,33.2559,33.2469,33.2359,33.2285,33.213,33.2064,33.208,33.209,33.2082,33.2183,33.224,33.2369,33.2374,33.2413,33.2539,33.2533,33.2624,33.2559,33.2508,33.2485,33.2406,33.232,33.22,33.2153,33.2142,33.0159] }, "content_curves": { 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"CTTTT":270214, "CTTTC":189790, "CTTTG":234383, "CTTCA":222126, "CTTCT":246299, "CTTCC":260138, "CTTCG":84450, "CTTGA":219927, "CTTGT":137543, "CTTGC":131804, "CTTGG":196616, "CTCAA":176853, "CTCAT":161525, "CTCAC":183987, "CTCAG":264581, "CTCTA":123219, "CTCTT":203109, "CTCTC":204976, "CTCTG":273601, "CTCCA":244402, "CTCCT":296373, "CTCCC":310171, "CTCCG":118924, "CTCGA":52400, "CTCGT":59505, "CTCGC":80816, "CTCGG":164774, "CTGAA":244668, "CTGAT":174970, "CTGAC":165471, "CTGAG":339261, "CTGTA":221413, "CTGTT":185699, "CTGTC":196454, "CTGTG":272174, "CTGCA":244569, "CTGCT":254324, "CTGCC":290176, "CTGCG":103383, "CTGGA":345579, "CTGGT":201546, "CTGGC":284479, "CTGGG":383513, "CCAAA":225073, "CCAAT":101364, "CCAAC":146331, "CCAAG":237762, "CCATA":86160, "CCATT":179131, "CCATC":195026, "CCATG":210348, "CCACA":202673, "CCACT":177763, "CCACC":276253, "CCACG":85266, "CCAGA":254747, "CCAGT":179815, "CCAGC":358576, "CCAGG":376202, "CCTAA":111976, "CCTAT":94623, "CCTAC":110007, "CCTAG":104542, "CCTTA":101777, "CCTTT":198703, "CCTTC":233535, "CCTTG":175482, "CCTCA":247710, "CCTCT":232269, "CCTCC":365687, "CCTCG":111036, "CCTGA":252158, "CCTGT":266395, "CCTGC":268041, "CCTGG":374917, "CCCAA":194115, "CCCAT":166453, "CCCAC":200964, "CCCAG":424421, "CCCTA":98839, "CCCTT":182883, "CCCTC":249354, "CCCTG":282132, "CCCCA":263875, "CCCCT":221021, "CCCCC":248292, "CCCCG":169332, "CCCGA":96548, "CCCGT":79116, "CCCGC":159326, "CCCGG":177022, "CCGAA":67499, "CCGAT":63913, "CCGAC":64431, "CCGAG":130435, "CCGTA":32769, "CCGTT":40846, "CCGTC":83826, "CCGTG":96795, "CCGCA":96484, "CCGCT":83757, "CCGCC":222695, "CCGCG":126699, "CCGGA":85447, "CCGGT":65356, "CCGGC":175220, "CCGGG":168293, "CGAAA":62900, "CGAAT":40174, "CGAAC":47712, "CGAAG":75671, "CGATA":27716, "CGATT":35171, "CGATC":64570, "CGATG":54511, "CGACA":56513, "CGACT":42004, "CGACC":62747, "CGACG":51529, "CGAGA":101352, "CGAGT":65917, "CGAGC":83848, "CGAGG":120269, "CGTAA":29220, "CGTAT":24511, "CGTAC":26851, "CGTAG":33902, "CGTTA":25291, "CGTTT":46144, "CGTTC":49061, "CGTTG":45497, "CGTCA":51649, "CGTCT":63708, "CGTCC":91319, "CGTCG":49290, "CGTGA":75324, "CGTGT":77461, "CGTGC":117509, "CGTGG":126970, "CGCAA":49913, "CGCAT":40015, "CGCAC":72123, "CGCAG":81968, "CGCTA":57649, "CGCTT":120165, "CGCTC":88469, "CGCTG":91241, "CGCCA":106282, "CGCCT":126778, "CGCCC":146483, "CGCCG":145368, "CGCGA":43032, "CGCGT":79957, "CGCGC":96499, "CGCGG":114244, "CGGAA":78299, "CGGAT":44101, "CGGAC":59311, "CGGAG":117440, "CGGTA":27303, "CGGTT":44023, "CGGTC":68483, "CGGTG":130475, "CGGCA":88225, "CGGCT":120797, "CGGCC":166481, "CGGCG":142738, "CGGGA":169326, "CGGGT":110003, "CGGGC":137721, "CGGGG":176645, "GAAAA":344734, "GAAAT":232166, "GAAAC":198844, "GAAAG":262363, "GAATA":124671, "GAATT":171481, "GAATC":123857, "GAATG":186634, "GAACA":179606, "GAACT":162774, "GAACC":146493, "GAACG":69545, "GAAGA":366580, "GAAGT":185743, "GAAGC":226292, "GAAGG":287837, "GATAA":118304, "GATAT":104506, "GATAC":72145, "GATAG":79569, "GATTA":121917, "GATTT":176569, "GATTC":136140, "GATTG":120851, "GATCA":148876, "GATCT":155984, "GATCC":135340, "GATCG":151891, "GATGA":230638, "GATGT":144287, "GATGC":134600, "GATGG":203989, "GACAA":158859, "GACAT":143592, "GACAC":119344, "GACAG":196372, "GACTA":84534, "GACTT":147525, "GACTC":125793, "GACTG":152640, "GACCA":178565, "GACCT":171133, "GACCC":154675, "GACCG":74190, "GACGA":72968, "GACGT":56244, "GACGC":63877, "GACGG":85337, "GAGAA":318230, "GAGAT":194859, "GAGAC":206147, "GAGAG":257166, "GAGTA":104948, "GAGTT":188646, "GAGTC":145063, "GAGTG":182553, "GAGCA":197897, "GAGCT":207372, "GAGCC":241268, "GAGCG":109234, "GAGGA":395255, "GAGGT":219750, "GAGGC":352575, "GAGGG":214070, "GTAAA":133697, "GTAAT":111854, "GTAAC":74991, "GTAAG":79880, "GTATA":80959, "GTATT":126539, "GTATC":68894, "GTATG":91275, "GTACA":97081, "GTACT":84736, "GTACC":84125, "GTACG":29775, "GTAGA":112860, "GTAGT":152267, "GTAGC":90784, "GTAGG":81530, "GTTAA":100399, "GTTAT":89893, "GTTAC":74106, "GTTAG":72733, "GTTTA":122305, "GTTTT":240914, "GTTTC":159486, "GTTTG":179137, "GTTCA":142994, "GTTCT":190186, "GTTCC":138719, "GTTCG":73181, "GTTGA":140119, "GTTGT":121770, "GTTGC":119080, "GTTGG":157188, "GTCAA":114065, "GTCAT":119354, "GTCAC":125895, "GTCAG":144610, "GTCTA":68829, "GTCTT":151102, "GTCTC":168406, "GTCTG":161057, "GTCCA":146352, "GTCCT":154120, "GTCCC":222067, "GTCCG":83113, "GTCGA":38053, "GTCGT":57057, "GTCGC":58650, "GTCGG":80385, "GTGAA":217875, "GTGAT":167976, "GTGAC":149721, "GTGAG":195714, "GTGTA":97841, "GTGTT":154281, "GTGTC":170531, "GTGTG":239799, "GTGCA":148089, "GTGCT":181408, "GTGCC":211157, "GTGCG":110450, "GTGGA":238639, "GTGGT":198071, "GTGGC":257227, "GTGGG":279804, "GCAAA":172098, "GCAAT":103717, "GCAAC":120516, "GCAAG":174035, "GCATA":69145, "GCATT":129061, "GCATC":134656, "GCATG":142280, "GCACA":144577, "GCACT":151250, "GCACC":141751, "GCACG":58886, "GCAGA":235033, "GCAGT":185595, "GCAGC":230345, "GCAGG":241230, "GCTAA":104458, "GCTAT":110936, "GCTAC":151182, "GCTAG":85418, "GCTTA":83115, "GCTTT":173770, "GCTTC":174997, "GCTTG":194948, "GCTCA":188191, "GCTCT":177179, "GCTCC":196234, "GCTCG":73453, "GCTGA":304294, "GCTGT":220725, "GCTGC":254616, "GCTGG":382664, "GCCAA":185038, "GCCAT":169089, "GCCAC":200446, "GCCAG":261524, "GCCTA":99822, "GCCTT":174875, "GCCTC":266346, "GCCTG":333584, "GCCCA":243514, "GCCCT":208335, "GCCCC":237991, "GCCCG":150101, "GCCGA":118175, "GCCGT":72984, "GCCGC":180494, "GCCGG":152431, "GCGAA":55556, "GCGAT":45982, "GCGAC":61213, "GCGAG":89359, "GCGTA":24452, "GCGTT":38620, "GCGTC":70809, "GCGTG":140971, "GCGCA":67170, "GCGCT":99463, "GCGCC":131181, "GCGCG":125927, "GCGGA":83770, "GCGGT":100468, "GCGGC":163874, "GCGGG":178392, "GGAAA":290337, "GGAAT":169535, "GGAAC":151766, "GGAAG":317655, "GGATA":94595, "GGATT":161813, "GGATC":185406, "GGATG":186907, "GGACA":175414, "GGACT":151393, "GGACC":166352, "GGACG":86129, "GGAGA":310129, "GGAGT":222156, "GGAGC":248122, "GGAGG":490348, "GGTAA":89181, "GGTAT":80156, "GGTAC":66186, "GGTAG":86931, "GGTTA":76518, "GGTTT":163792, "GGTTC":131561, "GGTTG":154174, "GGTCA":138780, "GGTCT":145590, "GGTCC":125335, "GGTCG":70230, "GGTGA":216675, "GGTGT":199596, "GGTGC":165980, "GGTGG":361357, "GGCAA":167531, "GGCAT":161866, "GGCAC":142902, "GGCAG":258681, "GGCTA":112140, "GGCTT":162216, "GGCTC":203922, "GGCTG":456069, "GGCCA":234459, "GGCCT":210990, "GGCCC":251119, "GGCCG":169581, "GGCGA":84203, "GGCGT":90366, "GGCGC":149903, "GGCGG":216128, "GGGAA":236280, "GGGAT":155405, "GGGAC":169803, "GGGAG":383388, "GGGTA":78385, "GGGTT":164989, "GGGTC":127450, "GGGTG":236812, "GGGCA":189892, "GGGCT":221174, "GGGCC":234388, "GGGCG":146347, "GGGGA":243740, "GGGGT":171780, "GGGGC":222335, "GGGGG":4613123 }, "overrepresented_sequences": { } }, "command": "fastp -w 2 --in1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/45941_Exp215_GHEtest_5_S2_IPSC_noRibo_A01_R1.fastq.gz --in2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/45941_Exp215_GHEtest_5_S2_IPSC_noRibo_A01_R2.fastq.gz --out1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/45941_Exp215_GHEtest_5_S2_IPSC_noRibo_A01_R1_trimmed.fastq.gz --out2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/45941_Exp215_GHEtest_5_S2_IPSC_noRibo_A01_R2_trimmed.fastq.gz -h /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/45941_Exp215_GHEtest_5_S2_IPSC_noRibo_A01.fastp.html -j /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/45941_Exp215_GHEtest_5_S2_IPSC_noRibo_A01.fastp.json " }