############################################ # Single-cell / single-nucleus sequencing coverage ############################################ track SingleCellCoverage shortLabel Single-cell longLabel Single-cell and single-nucleus coverage tracks type bigWig dimensions dimX=view dimY=samples visibility full subGroup1 view Views scRNA=scRNA snRNA=snRNA snATAC=snATAC subGroup2 samples Samples ALL=ALL CT_W8=CT_W8 CT_W24=CT_W24 PS_W8=PS_W8 PS_W24=PS_W24 autoScale group compositeTrack on ############################################ # scRNA-seq ############################################ track scRNA_view shortLabel scRNA longLabel scRNA-seq coverage type bigWig parent SingleCellCoverage view scRNA visibility full maxHeightPixels 100:16:8 track scRNA_ALL bigDataUrl scRNA_ALL_coverage.bw shortLabel scRNA ALL longLabel scRNA-seq ALL type bigWig color 0,102,204 parent scRNA_view priority 1 subGroups samples=ALL view=scRNA track scRNA_CT_W8 bigDataUrl scRNA_CT_W8_coverage.bw shortLabel scRNA CT W8 longLabel scRNA-seq CT W8 type bigWig color 51,153,255 parent scRNA_view priority 2 subGroups samples=CT_W8 view=scRNA track scRNA_CT_W24 bigDataUrl scRNA_CT_W24_coverage.bw shortLabel scRNA CT W24 longLabel scRNA-seq CT W24 type bigWig color 0,76,153 parent scRNA_view priority 3 subGroups samples=CT_W24 view=scRNA track scRNA_PS_W8 bigDataUrl scRNA_PS_W8_coverage.bw shortLabel scRNA PS W8 longLabel scRNA-seq PS W8 type bigWig color 102,178,255 parent scRNA_view priority 4 subGroups samples=PS_W8 view=scRNA track scRNA_PS_W24 bigDataUrl scRNA_PS_W24_coverage.bw shortLabel scRNA PS W24 longLabel scRNA-seq PS W24 type bigWig color 0,51,102 parent scRNA_view priority 5 subGroups samples=PS_W24 view=scRNA ############################################ # snRNA-seq ############################################ track snRNA_view shortLabel snRNA longLabel snRNA-seq coverage type bigWig parent SingleCellCoverage view snRNA visibility full maxHeightPixels 100:16:8 track snRNA_ALL bigDataUrl snRNA_ALL_coverage.bw shortLabel snRNA ALL longLabel snRNA-seq ALL type bigWig color 0,153,0 parent snRNA_view priority 6 subGroups samples=ALL view=snRNA track snRNA_CT_W8 bigDataUrl snRNA_CT_W8_coverage.bw shortLabel snRNA CT W8 longLabel snRNA-seq CT W8 type bigWig color 51,204,51 parent snRNA_view priority 7 subGroups samples=CT_W8 view=snRNA track snRNA_CT_W24 bigDataUrl snRNA_CT_W24_coverage.bw shortLabel snRNA CT W24 longLabel snRNA-seq CT W24 type bigWig color 0,102,0 parent snRNA_view priority 8 subGroups samples=CT_W24 view=snRNA track snRNA_PS_W8 bigDataUrl snRNA_PS_W8_coverage.bw shortLabel snRNA PS W8 longLabel snRNA-seq PS W8 type bigWig color 102,255,102 parent snRNA_view priority 9 subGroups samples=PS_W8 view=snRNA track snRNA_PS_W24 bigDataUrl snRNA_PS_W24_coverage.bw shortLabel snRNA PS W24 longLabel snRNA-seq PS W24 type bigWig color 0,76,0 parent snRNA_view priority 10 subGroups samples=PS_W24 view=snRNA ############################################ # snATAC-seq ############################################ track snATAC_view shortLabel snATAC longLabel snATAC-seq coverage type bigWig parent SingleCellCoverage view snATAC visibility full maxHeightPixels 100:16:8 track snATAC_ALL bigDataUrl snATAC_ALL_coverage.bw shortLabel snATAC ALL longLabel snATAC-seq ALL type bigWig color 204,0,0 parent snATAC_view priority 11 subGroups samples=ALL view=snATAC track snATAC_CT_W8 bigDataUrl snATAC_CT_W8_coverage.bw shortLabel snATAC CT W8 longLabel snATAC-seq CT W8 type bigWig color 255,51,51 parent snATAC_view priority 12 subGroups samples=CT_W8 view=snATAC track snATAC_CT_W24 bigDataUrl snATAC_CT_W24_coverage.bw shortLabel snATAC CT W24 longLabel snATAC-seq CT W24 type bigWig color 153,0,0 parent snATAC_view priority 13 subGroups samples=CT_W24 view=snATAC track snATAC_PS_W8 bigDataUrl snATAC_PS_W8_coverage.bw shortLabel snATAC PS W8 longLabel snATAC-seq PS W8 type bigWig color 255,102,102 parent snATAC_view priority 14 subGroups samples=PS_W8 view=snATAC track snATAC_PS_W24 bigDataUrl snATAC_PS_W24_coverage.bw shortLabel snATAC PS W24 longLabel snATAC-seq PS W24 type bigWig color 102,0,0 parent snATAC_view priority 15 subGroups samples=PS_W24 view=snATAC ############################################ # Bulk RNA – Timepoints / Conditions ############################################ track BulkRNA shortLabel Bulk RNA longLabel Bulk RNA-seq coverage tracks type bigWig visibility full compositeTrack on autoScale group subGroup1 group Groups Diff13=Diff13 d1=d1 maxHeightPixels 100:16:8 track BulkRNA_Diff13_ALL bigDataUrl bulkRNA_482_ALL_coverage.bw shortLabel Diff13 ALL longLabel Diff13 bulk RNA ALL type bigWig color 80,80,80 parent BulkRNA subGroups group=Diff13 track BulkRNA_Diff13_CPA3 bigDataUrl bulkRNA_48212_TK_RNA_Diff13_CPA3sort_U38_coverage.bw shortLabel Diff13 CPA3 longLabel Diff13 CPA3 sorted type bigWig color 120,120,120 parent BulkRNA subGroups group=Diff13 track BulkRNA_Diff13_PNMT bigDataUrl bulkRNA_48213_TK_RNA_Diff13_PNMTsort_U39_coverage.bw shortLabel Diff13 PNMT longLabel Diff13 PNMT sorted type bigWig color 160,160,160 parent BulkRNA subGroups group=Diff13 track BulkRNA_Diff13_DP bigDataUrl bulkRNA_48214_TK_RNA_Diff13_DPsort_U40_coverage.bw shortLabel Diff13 DP longLabel Diff13 DP sorted type bigWig color 200,200,200 parent BulkRNA subGroups group=Diff13 track BulkRNA_d1_ALL bigDataUrl bulkRNA_d1_ALL_coverage.bw shortLabel d1 ALL longLabel Day 1 bulk RNA ALL type bigWig color 0,0,0 parent BulkRNA subGroups group=d1 ############################################ # Bulk RNA – Sorted populations ############################################ track BulkRNA_Sorted shortLabel Bulk sorted longLabel Bulk RNA sorted population coverage type bigWig visibility full compositeTrack on autoScale group maxHeightPixels 100:16:8 track bulk_sort_ALL bigDataUrl bulkRNA_sort_ALL_coverage.bw shortLabel Sort ALL longLabel Sorted bulk ALL type bigWig color 60,60,60 parent BulkRNA_Sorted track bulk_sort_CPA3 bigDataUrl bulkRNA_sort_CPA3_coverage.bw shortLabel Sort CPA3 longLabel Sorted CPA3 type bigWig color 180,0,180 parent BulkRNA_Sorted track bulk_sort_PNMT bigDataUrl bulkRNA_sort_PNMT_coverage.bw shortLabel Sort PNMT longLabel Sorted PNMT type bigWig color 255,140,0 parent BulkRNA_Sorted track bulk_sort_DP bigDataUrl bulkRNA_sort_DP_coverage.bw shortLabel Sort DP longLabel Sorted DP type bigWig color 0,150,150 parent BulkRNA_Sorted ############################################ # Logie datasets ############################################ track Logie shortLabel Logie longLabel Logie lab coverage tracks type bigWig visibility full compositeTrack on autoScale group maxHeightPixels 100:16:8 track Logie_ALL bigDataUrl Logie_ALL_coverage.bw shortLabel Logie ALL longLabel Logie ALL cells type bigWig color 100,0,200 parent Logie track Logie_cluster3 bigDataUrl Logie_cluster3_coverage.bw shortLabel Logie cl3 longLabel Logie cluster 3 type bigWig color 150,50,255 parent Logie track Logie_cluster9 bigDataUrl Logie_cluster9_coverage.bw shortLabel Logie cl9 longLabel Logie cluster 9 type bigWig color 200,120,255 parent Logie