Sample fastp_mqc-generalstats-fastp-pct_duplication fastp_mqc-generalstats-fastp-after_filtering_q30_rate fastp_mqc-generalstats-fastp-after_filtering_q30_bases fastp_mqc-generalstats-fastp-after_filtering_gc_content fastp_mqc-generalstats-fastp-pct_surviving fastp_mqc-generalstats-fastp-pct_adapter Picard_mqc-generalstats-picard-summed_median Picard_mqc-generalstats-picard-summed_mean Picard_mqc-generalstats-picard-PERCENT_DUPLICATION SamTools pre-sieve_mqc-generalstats-samtools_pre_sieve-error_rate SamTools pre-sieve_mqc-generalstats-samtools_pre_sieve-non_primary_alignments SamTools pre-sieve_mqc-generalstats-samtools_pre_sieve-reads_mapped SamTools pre-sieve_mqc-generalstats-samtools_pre_sieve-reads_mapped_percent SamTools pre-sieve_mqc-generalstats-samtools_pre_sieve-reads_properly_paired_percent SamTools pre-sieve_mqc-generalstats-samtools_pre_sieve-reads_MQ0_percent SamTools pre-sieve_mqc-generalstats-samtools_pre_sieve-raw_total_sequences mtnucratio_mqc-generalstats-mtnucratio-mt_cov_avg mtnucratio_mqc-generalstats-mtnucratio-nuc_cov_avg mtnucratio_mqc-generalstats-mtnucratio-mt_nuc_ratio mtnucratio_mqc-generalstats-mtnucratio-nucreads mtnucratio_mqc-generalstats-mtnucratio-mtreads GSM1606183 2.30732 0.951619 5552131330.0 0.445453 92.28511778509652 0.9584884513921282 161 284.215972 0.095551 0.0 2715666.0 72877652.0 100.0 100.0 0.26563149976346656 72877652.0 2896.8130607609314 3.947692298758882 733.8 74921306 672012 GSM1606184 1.4203999999999999 0.952914 5633784480.0 0.444381 97.08873897159023 0.8416819444439942 162 274.312895 0.07852 0.0 2783424.0 74644496.0 100.0 100.0 0.2592984216813521 74644496.0 2793.987166382737 4.04632943184206 690.5 76779914 648006 GSM1606185 1.52873 0.953669 2860162417.0 0.444988 97.03741408677696 0.9751839157261737 159 270.810684 0.060004 0.0 1870480.0 37596786.0 100.0 100.0 0.4007310624902884 37596786.0 1474.193867120954 2.0614343675211972 715.13 39125302 341964 GSM1606186 2.78302 0.953444 6733503092.0 0.444308 97.14870884274679 1.0927022432693607 157 264.039871 0.112712 0.0 5064440.0 88476210.0 100.0 100.0 0.48259300437936936 88476210.0 3799.258375922771 4.8811947169723915 778.35 92659306 881344 GSM1606187 2.64243 0.961109 6495190159.0 0.446032 97.30327447803528 1.1165905603449284 159 266.852256 0.113215 0.0 5189872.0 84381248.0 100.0 100.0 0.5276361876041463 84381248.0 3799.8971039182284 4.671806048744899 813.37 88689736 881384 GSM1606188 2.12922 0.961106 4370251203.0 0.446717 97.49677899321921 1.0269138906074065 162 275.78649 0.093826 0.0 3609994.0 56764272.0 100.0 100.0 0.5493103126558199 56764272.0 2792.401022146508 3.1462779617784844 887.53 59726672 647594 GSM1606189 2.47641 0.950963 5233800296.0 0.447645 84.87951792278858 0.8419925092643853 164 281.64631 0.116808 0.0 4558158.0 66147516.0 100.0 100.0 0.5989098668497241 66147516.0 3883.8646223736514 3.676988443921226 1056.26 69804974 900700 GSM1606190 2.4926500000000003 0.959171 4718439980.0 0.448328 96.46466300213189 0.9672642923613626 164 280.966654 0.119809 0.0 4235494.0 61023044.0 100.0 100.0 0.5991474302724067 61023044.0 3456.663600227144 3.3952565003239026 1018.09 64456902 801636 GSM1606191 1.9639799999999998 0.959979 3290146735.0 0.449848 97.14231175353447 1.0393901138726689 166 283.012216 0.101377 0.0 3077128.0 42561112.0 100.0 100.0 0.6231839055332953 42561112.0 2976.618285065304 2.3673226602893873 1257.38 44947912 690328 GSM1606192 1.33599 0.960799 3818547234.0 0.450622 97.41777534402168 1.056473881781215 167 278.078479 0.100386 0.0 3720000.0 49596240.0 100.0 100.0 0.655549694896226 49596240.0 3694.661101646792 2.7630215548676227 1337.18 52459306 856934 GSM1606193 2.68922 0.957007 5212110678.0 0.449387 97.16463364933657 1.0262472972790737 166 280.558645 0.150006 0.0 5392248.0 67685258.0 100.0 100.0 0.6968193871699507 67685258.0 4848.077683134583 3.789772226456444 1279.25 71953192 1124314 GSM1606194 2.1217900000000003 0.957209 3306156099.0 0.448973 97.29149013488382 1.1058421153887261 164 273.550456 0.124392 0.0 3562942.0 42935274.0 100.0 100.0 0.7304623233567812 42935274.0 3542.7150482680295 2.4056657450425174 1472.65 45676600 821616 GSM1606195 2.01309 0.949289 3108962140.0 0.450446 87.2535285167643 0.909515697742012 166 279.750029 0.120039 0.0 3397330.0 39460332.0 100.0 100.0 0.7561416361119314 39460332.0 2344.075525269733 2.2286181709550767 1051.81 42314044 543618 GSM1606196 2.7167299999999996 0.956137 5112677976.0 0.448428 96.88304157072962 1.1081753156707304 162 264.695274 0.165091 0.0 5759292.0 66512580.0 100.0 100.0 0.7514367958662858 66512580.0 5473.887223168655 3.739632133762343 1463.75 71002420 1269452 GSM1606197 3.10762 0.957161 5994959128.0 0.448773 97.148196287633 1.0653274712064416 164 267.197486 0.179997 0.0 6879978.0 78001562.0 100.0 100.0 0.7653154432984304 78001562.0 6151.040999432141 4.395617622622081 1399.36 83455014 1426526 GSM1606198 2.77682 0.957149 5907596741.0 0.449626 97.10893515230859 1.1381373663925258 170 282.237932 0.167518 0.0 6578432.0 76764470.0 100.0 100.0 0.7321955065930893 76764470.0 4454.849063032368 4.334648662431847 1027.73 82309708 1033194 GSM1606199 2.31071 0.952498 3646228996.0 0.448032 97.12871998418129 1.4574172998052228 150 233.768917 0.146078 0.0 4139822.0 47834924.0 100.0 100.0 0.7397774897687723 47834924.0 4220.601703577513 2.6853984196236858 1571.69 50995752 978994 GSM1606200 2.1392499999999997 0.951778 4582018951.0 0.44851 97.14052105133676 0.7394222857310727 163 257.282078 0.144243 0.0 5317996.0 60042504.0 100.0 100.0 0.7573001952083811 60042504.0 4785.91697898921 3.3849639983020974 1413.88 64251068 1109432 GSM1606201 2.20607 0.949645 6233449729.0 0.449717 92.13257372471921 0.7306128121370775 163 260.169556 0.168447 0.0 7070482.0 81298192.0 100.0 100.0 0.732247526488658 81298192.0 7008.736854060193 4.569890567238835 1533.68 86743832 1624842 GSM1606202 2.58368 0.950412 5396796664.0 0.449154 96.75486559609064 0.8117563072532336 160 253.528815 0.160505 0.0 6312606.0 70722856.0 100.0 100.0 0.7560271604415975 70722856.0 5974.609540034072 3.9853228570599395 1499.15 75650344 1385118 GSM1606203 1.94642 0.952111 5429343434.0 0.447955 97.16364830949364 0.7612920832064233 161 251.585798 0.146811 0.0 6334350.0 71338934.0 100.0 100.0 0.7591338552942213 71338934.0 5744.487791027826 4.021930248475537 1428.29 76341576 1331708 GSM1606204 1.9054600000000002 0.95279 5142840868.0 0.448486 97.25045590227622 0.7428191459535545 162 254.19347 0.145334 0.0 5905536.0 67620544.0 100.0 100.0 0.7403755876320663 67620544.0 5494.335150482681 3.806655713058687 1443.35 72252400 1273680 GSM1606205 2.09849 0.953258 5996151780.0 0.448293 97.17583517154684 0.710287523085312 165 261.846259 0.149116 0.0 6984560.0 78813672.0 100.0 100.0 0.7465938143321124 78813672.0 5899.160477001704 4.448298029067448 1326.16 84430726 1367506 GSM1606206 2.1109 0.953589 6263237015.0 0.44794 97.33265023396011 0.7366858672875636 161 253.638269 0.152693 0.0 7266998.0 82376162.0 100.0 100.0 0.740906088827008 82376162.0 6509.971039182283 4.643596512774375 1401.92 88134070 1509090 GSM1606207 1.69354 0.952579 5419060854.0 0.44981 94.6007837335836 0.7093893403901753 166 263.930047 0.13036 0.0 6468722.0 70946614.0 100.0 100.0 0.7701424623309014 70946614.0 3689.105053946621 4.033499037621155 914.62 76560174 855162 GSM1606208 1.9129299999999998 0.952671 3976389812.0 0.448856 97.10937589121932 0.8287114570767233 159 252.358569 0.122831 0.0 4746088.0 52197210.0 100.0 100.0 0.7597264298225902 52197210.0 2627.928790459966 2.967772084265234 885.49 56334086 609212 GSM1606209 2.2236700000000003 0.953683 5167621948.0 0.448508 97.33106239679988 0.865398936461751 157 251.009426 0.142767 0.0 6006630.0 67856810.0 100.0 100.0 0.7390650989930119 67856810.0 4786.750482680295 3.8329845680325896 1248.83 72753672 1109768 GSM1606210 2.07891 0.95391 4636853201.0 0.44917 97.28648046625071 0.8753776917420418 158 255.570097 0.135419 0.0 5396028.0 60837334.0 100.0 100.0 0.7328986506870929 60837334.0 3992.5747870528107 3.4407858021763746 1160.37 65307686 925676 GSM1606211 2.09681 0.955155 4893481681.0 0.448849 97.32838709413197 0.8587516725773002 157 253.136128 0.140098 0.0 5537684.0 64190594.0 100.0 100.0 0.710839348207309 64190594.0 5275.91073253833 3.6094026646324076 1461.71 68505130 1223148 GSM1606212 2.34344 0.955056 6099331466.0 0.448807 97.3973797662749 0.916577568977956 157 249.914196 0.152714 0.0 7025636.0 79974596.0 100.0 100.0 0.7225194360469167 79974596.0 6344.980352072686 4.505912227256529 1408.15 85529142 1471090 GSM1606213 1.9561499999999998 0.954878 4649882569.0 0.448305 95.00828688574968 0.8248942757472155 158 255.892811 0.131919 0.0 5079110.0 60813148.0 100.0 100.0 0.6782349106479407 60813148.0 4259.220102214651 3.4196714626576514 1245.51 64904756 987502 GSM1606214 1.90799 0.954264 4390005874.0 0.448316 97.15597714878024 0.7744556726729785 159 257.077051 0.126508 0.0 4775318.0 57688724.0 100.0 100.0 0.6587283851173411 57688724.0 3726.5309483248157 3.2457179504859424 1148.14 61600144 863898 GSM1606215 1.93754 0.955489 4861823345.0 0.448925 97.46326577436524 0.8244972189612552 159 258.747177 0.131587 0.0 5167204.0 63903388.0 100.0 100.0 0.6363762747602678 63903388.0 4545.895400340715 3.583689744782245 1268.5 68016698 1053894 GSM1606216 2.19321 0.955416 5904533499.0 0.450032 97.21137645936605 0.8364769727220747 159 260.342954 0.14693 0.0 6308520.0 77511318.0 100.0 100.0 0.6357884405990878 77511318.0 5625.20840431573 4.3475814047215025 1293.87 82515728 1304110 GSM1606217 1.83791 0.935953 5133473535.0 0.447442 96.53276060611736 0.8356398450113927 156 247.270534 0.131204 0.0 5678346.0 68899476.0 100.0 100.0 0.6504664854054913 68899476.0 3582.9785349233393 3.885288246775638 922.19 73747166 830656 GSM1606218 2.128 0.935975 6045816843.0 0.448285 96.67416038112111 0.8300069211548636 157 249.894465 0.148967 0.0 6709996.0 81053290.0 100.0 100.0 0.6529753449859963 81053290.0 3213.604202157865 4.584534641551344 700.97 87018256 745030 GSM1606219 1.64156 0.936122 6909235375.0 0.446205 93.45428231053728 0.6593981905062125 165 265.234501 0.146867 0.0 7155184.0 92957810.0 100.0 100.0 0.5888520824662286 92957810.0 7713.53594548552 5.18099075660352 1488.81 98324900 1788094 GSM1606220 1.5786499999999999 0.934873 5725202848.0 0.445969 96.05926376166053 0.71170009378124 164 263.226179 0.133339 0.0 6146250.0 77134804.0 100.0 100.0 0.618820526205006 77134804.0 5655.2282793867125 4.318867973458683 1309.42 81970052 1311002 GSM1606221 1.61316 0.936154 5042839671.0 0.446544 96.57608580117122 0.6788005324030353 162 261.693673 0.131474 0.0 5204900.0 67877378.0 100.0 100.0 0.5840973998730475 67877378.0 6029.646564452016 3.7770221877786048 1596.4 71684556 1397722 GSM1606222 1.8123099999999999 0.936801 5428622733.0 0.444967 96.6340094529891 0.7154860118709743 160 256.047557 0.138393 0.0 5619770.0 73007520.0 100.0 100.0 0.5923471993022089 73007520.0 4904.0107893242475 4.0830100293901035 1201.08 77490436 1136854 GSM1606223 2.05764 0.947183 4075726400.0 0.447789 95.97887359724683 0.5950654251193166 176 309.593921 0.142 0.0 3696206.0 54381540.0 100.0 100.0 0.4775113025486222 54381540.0 4819.718568994889 3.001964217603916 1605.52 56960550 1117196 GSM1606224 2.33157 0.926526 5228256618.0 0.447904 96.57975413293175 3.498433250791137 152 255.610303 0.160814 0.0 4760254.0 71204146.0 100.0 100.0 0.45566166891461635 71204146.0 7752.663145939807 3.89102511908139 1992.45 74159626 1804774 GSM1606225 2.39803 0.927001 5908314929.0 0.445507 96.68935510412766 3.4442264779469727 150 248.106702 0.166366 0.0 5956410.0 80400692.0 100.0 100.0 0.5305874730530926 80400692.0 8197.627484383873 4.432218814364264 1849.55 84449520 1907582 GSM1606226 2.2265900000000003 0.927215 4851764995.0 0.446017 96.51859040776574 3.3372383941878727 151 248.968301 0.154223 0.0 4810528.0 65886696.0 100.0 100.0 0.5220143380690997 65886696.0 7469.352413401476 3.619080663078801 2063.88 68959360 1737864 GSM1606227 1.96581 0.924997 3545770713.0 0.449719 96.37381724230013 3.0638150892379605 155 267.735428 0.140963 0.0 3125462.0 48335048.0 100.0 100.0 0.4266427955135164 48335048.0 5286.372515616126 2.6375885599221838 2004.24 50230854 1229656 GSM1606228 2.37173 0.926409 5508125669.0 0.447583 96.52692372380233 3.0579105522051706 152 256.809347 0.163437 0.0 5122766.0 74993980.0 100.0 100.0 0.4722645737697879 74993980.0 8060.510391822828 4.108566922968941 1961.88 78241908 1874838 GSM1606229 1.90303 0.925661 3374695416.0 0.456096 96.56014332742816 2.7961750112027173 163 301.658078 0.155734 0.0 3061306.0 45778386.0 100.0 100.0 0.425427842737837 45778386.0 5781.0388415672915 2.4949722405075563 2317.08 47495456 1344236 GSM1606230 1.57852 0.934606 2498209881.0 0.451893 96.89062804674043 2.7912901944789454 158 282.104645 0.120859 0.0 2319354.0 33688244.0 100.0 100.0 0.46153785872602915 33688244.0 3807.091766042021 1.844938754703773 2063.53 35122336 885262 GSM1606231 2.147 0.934761 4998861494.0 0.450138 97.00218472597429 2.6991037996768426 161 285.002054 0.165593 0.0 4443186.0 67431456.0 100.0 100.0 0.4350521513283059 67431456.0 8530.389551391256 3.6716621246803975 2323.3 69891380 1983262 GSM1606232 2.15213 0.933605 4192042745.0 0.458275 96.80656798756029 3.6700109936910077 167 312.768413 0.173778 0.0 4045804.0 56295574.0 100.0 100.0 0.4667471726995802 56295574.0 6447.756388415673 3.085566563653088 2089.65 58839556 1501822 GSM1606233 2.4587000000000003 0.932788 5468476377.0 0.454234 96.71287424022978 2.762950145769151 162 292.711004 0.194873 0.0 5320582.0 73797184.0 100.0 100.0 0.44186238867867916 73797184.0 11965.70743895514 4.009953095936883 2984 76335474 2782292 GSM1606234 1.80782 0.935369 4080351995.0 0.447491 97.04936450019407 3.3454178741170826 153 258.890017 0.145742 0.0 3914042.0 55188950.0 100.0 100.0 0.47315268726801285 55188950.0 8664.136626916525 2.995725646620279 2892.17 57086642 2016350 GSM1606235 2.1473 0.935577 5844717751.0 0.448824 97.02031107664185 2.7225264661246413 161 278.019931 0.170273 0.0 5386392.0 78909888.0 100.0 100.0 0.4514035047166713 78909888.0 12023.927086882453 4.2807036281364965 2808.87 81500212 2796068 GSM1606265 3.86023 0.936791 2834896825.0 0.449906 72.10470469501367 0.5100852800465688 182 308.616377 0.148024 0.0 3235184.0 37533064.0 100.0 100.0 0.7386340747454032 37533064.0 2154.746734809767 2.119398753534069 1016.68 40268750 499498 GSM1606266 2.2637899999999997 0.93882 2109221454.0 0.450175 72.22951533055812 0.528688709092836 200 350.920418 0.096953 0.0 2347778.0 27769300.0 100.0 100.0 0.672044307922778 27769300.0 1014.0574673480977 1.5726025682057556 644.83 29882016 235062 GSM1606267 2.92672 0.938219 3986952137.0 0.45953 72.32244890999904 0.5431172069438897 189 373.358459 0.185175 0.0 3561926.0 52796352.0 100.0 100.0 0.4452731885718165 52796352.0 6454.111073253832 2.8890061471837707 2234.02 54862168 1496110 GSM1606268 3.47776 0.935879 3904526025.0 0.461964 71.79813084053563 0.5924062579117642 191 383.508744 0.197091 0.0 3599604.0 51522394.0 100.0 100.0 0.46509484788303895 51522394.0 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