Sample command GSM1606183 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606183_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606183_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606183_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606183_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606183.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606183.fastp.json GSM1606184 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606184_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606184_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606184_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606184_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606184.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606184.fastp.json GSM1606185 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606185_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606185_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606185_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606185_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606185.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606185.fastp.json GSM1606186 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606186_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606186_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606186_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606186_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606186.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606186.fastp.json GSM1606187 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606187_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606187_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606187_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606187_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606187.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606187.fastp.json GSM1606188 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606188_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606188_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606188_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606188_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606188.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606188.fastp.json GSM1606189 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606189_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606189_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606189_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606189_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606189.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606189.fastp.json GSM1606190 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606190_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606190_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606190_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606190_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606190.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606190.fastp.json GSM1606191 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606191_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606191_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606191_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606191_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606191.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606191.fastp.json GSM1606192 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606192_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606192_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606192_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606192_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606192.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606192.fastp.json GSM1606193 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606193_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606193_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606193_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606193_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606193.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606193.fastp.json GSM1606194 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606194_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606194_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606194_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606194_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606194.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606194.fastp.json GSM1606195 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606195_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606195_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606195_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606195_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606195.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606195.fastp.json GSM1606196 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606196_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606196_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606196_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606196_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606196.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606196.fastp.json GSM1606197 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606197_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606197_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606197_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606197_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606197.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606197.fastp.json GSM1606198 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606198_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606198_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606198_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606198_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606198.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606198.fastp.json GSM1606199 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606199_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606199_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606199_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606199_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606199.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606199.fastp.json GSM1606200 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606200_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606200_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606200_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606200_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606200.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606200.fastp.json GSM1606201 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606201_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606201_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606201_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606201_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606201.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606201.fastp.json GSM1606202 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606202_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606202_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606202_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606202_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606202.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606202.fastp.json GSM1606203 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606203_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606203_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606203_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606203_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606203.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606203.fastp.json GSM1606204 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606204_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606204_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606204_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606204_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606204.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/qc/trimming/GSM1606204.fastp.json GSM1606205 fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606205_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/fastq/xenopus/GSM1606205_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/heeringen/siebrenf/xt_rna/results/fastq_trimmed/GSM1606205_R1_trimmed.fastq.gz --out2 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