Module	Section	Sample Name	Source
fastp	all_sections	Xt_stage16_rep2	/bank/experiments/2021-10/xt_atac/results/qc/trimming/Xt_stage16_rep2.fastp.json
fastp	all_sections	Xt_stage9_rep2	/bank/experiments/2021-10/xt_atac/results/qc/trimming/Xt_stage9_rep2.fastp.json
fastp	all_sections	Xt_stage12_rep2	/bank/experiments/2021-10/xt_atac/results/qc/trimming/Xt_stage12_rep2.fastp.json
fastp	all_sections	Xt_stage16_rep1	/bank/experiments/2021-10/xt_atac/results/qc/trimming/Xt_stage16_rep1.fastp.json
fastp	all_sections	Xt_stage26_rep2	/bank/experiments/2021-10/xt_atac/results/qc/trimming/Xt_stage26_rep2.fastp.json
fastp	all_sections	Xt_stage12_rep1	/bank/experiments/2021-10/xt_atac/results/qc/trimming/Xt_stage12_rep1.fastp.json
fastp	all_sections	Xt_stage34_rep1	/bank/experiments/2021-10/xt_atac/results/qc/trimming/Xt_stage34_rep1.fastp.json
fastp	all_sections	Xt_stage26_rep1	/bank/experiments/2021-10/xt_atac/results/qc/trimming/Xt_stage26_rep1.fastp.json
fastp	all_sections	Xt_stage105_rep2	/bank/experiments/2021-10/xt_atac/results/qc/trimming/Xt_stage105_rep2.fastp.json
fastp	all_sections	Xt_stage105_rep3	/bank/experiments/2021-10/xt_atac/results/qc/trimming/Xt_stage105_rep3.fastp.json
fastp	all_sections	Xt_stage34_rep2	/bank/experiments/2021-10/xt_atac/results/qc/trimming/Xt_stage34_rep2.fastp.json
Picard	InsertSizeMetrics	Xt_stage12_rep2	/bank/experiments/2021-10/xt_atac/results/qc/InsertSizeMetrics/Xenopus_tropicalis_v9.1-Xt_stage12_rep2_allsizes.tsv
Picard	InsertSizeMetrics	Xt_stage105_rep2	/bank/experiments/2021-10/xt_atac/results/qc/InsertSizeMetrics/Xenopus_tropicalis_v9.1-Xt_stage105_rep2_allsizes.tsv
Picard	InsertSizeMetrics	Xt_stage34_rep2	/bank/experiments/2021-10/xt_atac/results/qc/InsertSizeMetrics/Xenopus_tropicalis_v9.1-Xt_stage34_rep2_allsizes.tsv
Picard	InsertSizeMetrics	Xt_stage34_rep1	/bank/experiments/2021-10/xt_atac/results/qc/InsertSizeMetrics/Xenopus_tropicalis_v9.1-Xt_stage34_rep1_allsizes.tsv
Picard	InsertSizeMetrics	Xt_stage16_rep1	/bank/experiments/2021-10/xt_atac/results/qc/InsertSizeMetrics/Xenopus_tropicalis_v9.1-Xt_stage16_rep1_allsizes.tsv
Picard	InsertSizeMetrics	Xt_stage16_rep2	/bank/experiments/2021-10/xt_atac/results/qc/InsertSizeMetrics/Xenopus_tropicalis_v9.1-Xt_stage16_rep2_allsizes.tsv
Picard	InsertSizeMetrics	Xt_stage9_rep2	/bank/experiments/2021-10/xt_atac/results/qc/InsertSizeMetrics/Xenopus_tropicalis_v9.1-Xt_stage9_rep2_allsizes.tsv
Picard	InsertSizeMetrics	Xt_stage26_rep1	/bank/experiments/2021-10/xt_atac/results/qc/InsertSizeMetrics/Xenopus_tropicalis_v9.1-Xt_stage26_rep1_allsizes.tsv
Picard	InsertSizeMetrics	Xt_stage26_rep2	/bank/experiments/2021-10/xt_atac/results/qc/InsertSizeMetrics/Xenopus_tropicalis_v9.1-Xt_stage26_rep2_allsizes.tsv
Picard	InsertSizeMetrics	Xt_stage105_rep3	/bank/experiments/2021-10/xt_atac/results/qc/InsertSizeMetrics/Xenopus_tropicalis_v9.1-Xt_stage105_rep3_allsizes.tsv
Picard	InsertSizeMetrics	Xt_stage12_rep1	/bank/experiments/2021-10/xt_atac/results/qc/InsertSizeMetrics/Xenopus_tropicalis_v9.1-Xt_stage12_rep1_allsizes.tsv
Picard	DuplicationMetrics	Xt_stage34_rep2	/bank/experiments/2021-10/xt_atac/results/qc/markdup/Xenopus_tropicalis_v9.1-Xt_stage34_rep2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Xt_stage16_rep2	/bank/experiments/2021-10/xt_atac/results/qc/markdup/Xenopus_tropicalis_v9.1-Xt_stage16_rep2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Xt_stage26_rep2	/bank/experiments/2021-10/xt_atac/results/qc/markdup/Xenopus_tropicalis_v9.1-Xt_stage26_rep2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Xt_stage105_rep2	/bank/experiments/2021-10/xt_atac/results/qc/markdup/Xenopus_tropicalis_v9.1-Xt_stage105_rep2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Xt_stage12_rep1	/bank/experiments/2021-10/xt_atac/results/qc/markdup/Xenopus_tropicalis_v9.1-Xt_stage12_rep1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Xt_stage105_rep3	/bank/experiments/2021-10/xt_atac/results/qc/markdup/Xenopus_tropicalis_v9.1-Xt_stage105_rep3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Xt_stage34_rep1	/bank/experiments/2021-10/xt_atac/results/qc/markdup/Xenopus_tropicalis_v9.1-Xt_stage34_rep1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Xt_stage9_rep2	/bank/experiments/2021-10/xt_atac/results/qc/markdup/Xenopus_tropicalis_v9.1-Xt_stage9_rep2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Xt_stage16_rep1	/bank/experiments/2021-10/xt_atac/results/qc/markdup/Xenopus_tropicalis_v9.1-Xt_stage16_rep1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Xt_stage26_rep1	/bank/experiments/2021-10/xt_atac/results/qc/markdup/Xenopus_tropicalis_v9.1-Xt_stage26_rep1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Xt_stage12_rep2	/bank/experiments/2021-10/xt_atac/results/qc/markdup/Xenopus_tropicalis_v9.1-Xt_stage12_rep2.samtools-coordinate.metrics.txt
SamTools pre-sieve	stats	Xt_stage12_rep1	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage12_rep1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Xt_stage26_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage26_rep2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Xt_stage16_rep1	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage16_rep1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Xt_stage34_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage34_rep2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Xt_stage26_rep1	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage26_rep1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Xt_stage105_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage105_rep2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Xt_stage16_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage16_rep2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Xt_stage105_rep3	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage105_rep3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Xt_stage12_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage12_rep2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Xt_stage9_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage9_rep2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Xt_stage34_rep1	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage34_rep1.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Xt_stage26_rep1	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/final_bam/Xenopus_tropicalis_v9.1-Xt_stage26_rep1.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Xt_stage9_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/final_bam/Xenopus_tropicalis_v9.1-Xt_stage9_rep2.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Xt_stage105_rep3	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/final_bam/Xenopus_tropicalis_v9.1-Xt_stage105_rep3.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Xt_stage16_rep1	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/final_bam/Xenopus_tropicalis_v9.1-Xt_stage16_rep1.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Xt_stage16_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/final_bam/Xenopus_tropicalis_v9.1-Xt_stage16_rep2.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Xt_stage105_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/final_bam/Xenopus_tropicalis_v9.1-Xt_stage105_rep2.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Xt_stage26_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/final_bam/Xenopus_tropicalis_v9.1-Xt_stage26_rep2.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Xt_stage34_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/final_bam/Xenopus_tropicalis_v9.1-Xt_stage34_rep2.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Xt_stage12_rep1	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/final_bam/Xenopus_tropicalis_v9.1-Xt_stage12_rep1.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Xt_stage34_rep1	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/final_bam/Xenopus_tropicalis_v9.1-Xt_stage34_rep1.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Xt_stage12_rep2	/bank/experiments/2021-10/xt_atac/results/qc/samtools_stats/final_bam/Xenopus_tropicalis_v9.1-Xt_stage12_rep2.samtools-coordinate.samtools_stats.txt
deepTools	plotPCA	Xenopus_tropicalis_v9.1	/bank/experiments/2021-10/xt_atac/results/qc/plotPCA/Xenopus_tropicalis_v9.1.tsv
deepTools	plotFingerprint	Xenopus_tropicalis_v9.1	/bank/experiments/2021-10/xt_atac/results/qc/plotFingerprint/Xenopus_tropicalis_v9.1.tsv
deepTools	plotProfile	macs2	/bank/experiments/2021-10/xt_atac/results/qc/plotProfile_gene/Xenopus_tropicalis_v9.1-macs2.tsv
macs2_frips	all_sections	Xt_stage9_rep2	/bank/experiments/2021-10/xt_atac/results/qc/macs2/Xenopus_tropicalis_v9.1-Xt_stage9_rep2_featureCounts.txt.summary
macs2_frips	all_sections	Xt_stage105_rep2	/bank/experiments/2021-10/xt_atac/results/qc/macs2/Xenopus_tropicalis_v9.1-Xt_stage105_rep2_featureCounts.txt.summary
macs2_frips	all_sections	Xt_stage26_rep1	/bank/experiments/2021-10/xt_atac/results/qc/macs2/Xenopus_tropicalis_v9.1-Xt_stage26_rep1_featureCounts.txt.summary
macs2_frips	all_sections	Xt_stage34_rep2	/bank/experiments/2021-10/xt_atac/results/qc/macs2/Xenopus_tropicalis_v9.1-Xt_stage34_rep2_featureCounts.txt.summary
macs2_frips	all_sections	Xt_stage16_rep2	/bank/experiments/2021-10/xt_atac/results/qc/macs2/Xenopus_tropicalis_v9.1-Xt_stage16_rep2_featureCounts.txt.summary
macs2_frips	all_sections	Xt_stage105_rep3	/bank/experiments/2021-10/xt_atac/results/qc/macs2/Xenopus_tropicalis_v9.1-Xt_stage105_rep3_featureCounts.txt.summary
macs2_frips	all_sections	Xt_stage16_rep1	/bank/experiments/2021-10/xt_atac/results/qc/macs2/Xenopus_tropicalis_v9.1-Xt_stage16_rep1_featureCounts.txt.summary
macs2_frips	all_sections	Xt_stage12_rep1	/bank/experiments/2021-10/xt_atac/results/qc/macs2/Xenopus_tropicalis_v9.1-Xt_stage12_rep1_featureCounts.txt.summary
macs2_frips	all_sections	Xt_stage26_rep2	/bank/experiments/2021-10/xt_atac/results/qc/macs2/Xenopus_tropicalis_v9.1-Xt_stage26_rep2_featureCounts.txt.summary
macs2_frips	all_sections	Xt_stage12_rep2	/bank/experiments/2021-10/xt_atac/results/qc/macs2/Xenopus_tropicalis_v9.1-Xt_stage12_rep2_featureCounts.txt.summary
macs2_frips	all_sections	Xt_stage34_rep1	/bank/experiments/2021-10/xt_atac/results/qc/macs2/Xenopus_tropicalis_v9.1-Xt_stage34_rep1_featureCounts.txt.summary
mtnucratio	all_sections	Xt_stage105_rep2	/bank/experiments/2021-10/xt_atac/results/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage105_rep2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Xt_stage16_rep2	/bank/experiments/2021-10/xt_atac/results/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage16_rep2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Xt_stage26_rep2	/bank/experiments/2021-10/xt_atac/results/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage26_rep2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Xt_stage9_rep2	/bank/experiments/2021-10/xt_atac/results/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage9_rep2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Xt_stage34_rep1	/bank/experiments/2021-10/xt_atac/results/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage34_rep1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Xt_stage26_rep1	/bank/experiments/2021-10/xt_atac/results/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage26_rep1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Xt_stage34_rep2	/bank/experiments/2021-10/xt_atac/results/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage34_rep2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Xt_stage12_rep1	/bank/experiments/2021-10/xt_atac/results/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage12_rep1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Xt_stage105_rep3	/bank/experiments/2021-10/xt_atac/results/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage105_rep3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Xt_stage12_rep2	/bank/experiments/2021-10/xt_atac/results/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage12_rep2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Xt_stage16_rep1	/bank/experiments/2021-10/xt_atac/results/bwa-mem2/Xenopus_tropicalis_v9.1-Xt_stage16_rep1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json