Sample	raw_total_sequences	filtered_sequences	sequences	is_sorted	1st_fragments	last_fragments	reads_mapped	reads_mapped_and_paired	reads_unmapped	reads_properly_paired	reads_paired	reads_duplicated	reads_MQ0	reads_QC_failed	non-primary_alignments	total_length	total_first_fragment_length	total_last_fragment_length	bases_mapped	bases_mapped_(cigar)	bases_trimmed	bases_duplicated	mismatches	error_rate	average_length	average_first_fragment_length	average_last_fragment_length	maximum_length	maximum_first_fragment_length	maximum_last_fragment_length	average_quality	insert_size_average	insert_size_standard_deviation	inward_oriented_pairs	outward_oriented_pairs	pairs_with_other_orientation	pairs_on_different_chromosomes	percentage_of_properly_paired_reads_(%)	reads_mapped_percent	reads_mapped_and_paired_percent	reads_unmapped_percent	reads_properly_paired_percent	reads_paired_percent	reads_duplicated_percent	reads_MQ0_percent	reads_QC_failed_percent
Xt_stage105_rep2	5947733.0	0.0	5947733.0	1.0	2976505.0	2971228.0	5947733.0	5926511.0	0.0	5883064.0	5947733.0	0.0	0.0	0.0	0.0	217866741.0	109054737.0	108812004.0	217866741.0	217866741.0	0.0	0.0	0.0	0.0	36.0	37.0	37.0	38.0	38.0	38.0	255.0	63.7	31.5	2265608.0	675947.0	51.0	21557.0	98.9	100.0	99.64319178416382	0.0	98.91271178447317	100.0	0.0	0.0	0.0
Xt_stage105_rep3	7313927.0	0.0	7313927.0	1.0	3657572.0	3656355.0	7313927.0	7253745.0	0.0	7217470.0	7313927.0	0.0	0.0	0.0	0.0	242943510.0	121512056.0	121431454.0	242943510.0	242943510.0	0.0	0.0	0.0	0.0	33.0	33.0	33.0	34.0	34.0	34.0	255.0	74.4	31.8	3412159.0	196628.0	103.0	17888.0	98.7	100.0	99.1771588641779	0.0	98.68118727463371	100.0	0.0	0.0	0.0
Xt_stage12_rep1	14329110.0	0.0	14329110.0	1.0	7210231.0	7118879.0	14329110.0	14224008.0	0.0	14038142.0	14329110.0	0.0	0.0	0.0	0.0	830797208.0	420450784.0	410346424.0	830797208.0	830797208.0	0.0	0.0	0.0	0.0	57.0	58.0	58.0	71.0	71.0	71.0	255.0	68.6	33.3	3024041.0	3995440.0	441.0	91969.0	98.0	100.0	99.26651411008778	0.0	97.96939237677707	100.0	0.0	0.0	0.0
Xt_stage12_rep2	14696423.0	0.0	14696423.0	1.0	7381316.0	7315107.0	14696423.0	14624640.0	0.0	14554839.0	14696423.0	0.0	0.0	0.0	0.0	800218318.0	404110629.0	396107689.0	800218318.0	800218318.0	0.0	0.0	0.0	0.0	54.0	55.0	54.0	71.0	71.0	71.0	255.0	61.1	31.6	2540351.0	4737281.0	281.0	34295.0	99.0	100.0	99.51156141872073	0.0	99.03660911229896	100.0	0.0	0.0	0.0
Xt_stage16_rep1	2450948.0	0.0	2450948.0	1.0	1225655.0	1225293.0	2450948.0	2443879.0	0.0	2442003.0	2450948.0	0.0	0.0	0.0	0.0	61277787.0	30637469.0	30640318.0	61277787.0	61277787.0	0.0	0.0	0.0	0.0	25.0	25.0	25.0	38.0	38.0	38.0	255.0	34.3	32.4	450879.0	770091.0	0.0	907.0	99.6	100.0	99.71158098825434	0.0	99.63503917667776	100.0	0.0	0.0	0.0
Xt_stage16_rep2	3897537.0	0.0	3897537.0	1.0	1950282.0	1947255.0	3897537.0	3869905.0	0.0	3866764.0	3897537.0	0.0	0.0	0.0	0.0	102792642.0	51430802.0	51361840.0	102792642.0	102792642.0	0.0	0.0	0.0	0.0	26.0	26.0	26.0	38.0	38.0	38.0	255.0	36.3	32.3	772288.0	1161065.0	9.0	1519.0	99.2	100.0	99.29103944362811	0.0	99.21045008681124	100.0	0.0	0.0	0.0
Xt_stage26_rep1	29300293.0	0.0	29300293.0	1.0	14656322.0	14643971.0	29300293.0	29213153.0	0.0	29167300.0	29300293.0	0.0	0.0	0.0	0.0	970142094.0	485331344.0	484810750.0	970142094.0	970142094.0	0.0	0.0	0.0	0.0	33.0	33.0	33.0	34.0	34.0	34.0	255.0	64.9	37.4	12315691.0	2268184.0	1009.0	21587.0	99.5	100.0	99.70259683068699	0.0	99.54610351507407	100.0	0.0	0.0	0.0
Xt_stage26_rep2	27527413.0	0.0	27527413.0	1.0	13768106.0	13759307.0	27527413.0	27421592.0	0.0	27366550.0	27527413.0	0.0	0.0	0.0	0.0	911486848.0	455945979.0	455540869.0	911486848.0	911486848.0	0.0	0.0	0.0	0.0	33.0	33.0	33.0	34.0	34.0	34.0	255.0	75.9	44.4	11715930.0	1967554.0	1920.0	25296.0	99.4	100.0	99.615579567902	0.0	99.41562616145585	100.0	0.0	0.0	0.0
Xt_stage34_rep1	10100624.0	0.0	10100624.0	1.0	5064976.0	5035648.0	10100624.0	10044380.0	0.0	10028996.0	10100624.0	0.0	0.0	0.0	0.0	333331770.0	167347705.0	165984065.0	333331770.0	333331770.0	0.0	0.0	0.0	0.0	33.0	33.0	33.0	34.0	34.0	34.0	255.0	72.3	44.1	4191912.0	822651.0	475.0	7065.0	99.3	100.0	99.44316311546693	0.0	99.29085569366804	100.0	0.0	0.0	0.0
Xt_stage34_rep2	50325482.0	0.0	50325482.0	1.0	25176660.0	25148822.0	50325482.0	50129908.0	0.0	49965173.0	50325482.0	0.0	0.0	0.0	0.0	1671596337.0	836423682.0	835172655.0	1671596337.0	1671596337.0	0.0	0.0	0.0	0.0	33.0	33.0	33.0	34.0	34.0	34.0	255.0	69.8	31.6	23127378.0	1855568.0	913.0	80985.0	99.3	100.0	99.61138176480853	0.0	99.2840426247681	100.0	0.0	0.0	0.0
Xt_stage9_rep2	2458499.0	0.0	2458499.0	1.0	1230420.0	1228079.0	2458499.0	2444934.0	0.0	2356488.0	2458499.0	0.0	0.0	0.0	0.0	89562364.0	44858112.0	44704252.0	89562364.0	89562364.0	0.0	0.0	0.0	0.0	36.0	36.0	36.0	38.0	38.0	38.0	255.0	66.8	33.9	915839.0	262405.0	35.0	44103.0	95.9	100.0	99.44824057280479	0.0	95.850679621997	100.0	0.0	0.0	0.0