Module Section Sample Name Source fastp all_sections GSM1481262 /home/siebrenf/tdewijs/results/qc/trimming/GSM1481262.fastp.json fastp all_sections GSM1481260 /home/siebrenf/tdewijs/results/qc/trimming/GSM1481260.fastp.json fastp all_sections GSM1481261 /home/siebrenf/tdewijs/results/qc/trimming/GSM1481261.fastp.json fastp all_sections GSM1481263 /home/siebrenf/tdewijs/results/qc/trimming/GSM1481263.fastp.json Picard InsertSizeMetrics GSM1481263 /home/siebrenf/tdewijs/results/qc/InsertSizeMetrics/GRCg6a-GSM1481263.tsv Picard InsertSizeMetrics GSM1481261 /home/siebrenf/tdewijs/results/qc/InsertSizeMetrics/GRCg6a-GSM1481261.tsv Picard InsertSizeMetrics GSM1481260 /home/siebrenf/tdewijs/results/qc/InsertSizeMetrics/GRCg6a-GSM1481260.tsv Picard InsertSizeMetrics GSM1481262 /home/siebrenf/tdewijs/results/qc/InsertSizeMetrics/GRCg6a-GSM1481262.tsv Picard DuplicationMetrics GSM1481263 /home/siebrenf/tdewijs/results/qc/markdup/GRCg6a-GSM1481263.samtools-coordinate.metrics.txt Picard DuplicationMetrics GSM1481261 /home/siebrenf/tdewijs/results/qc/markdup/GRCg6a-GSM1481261.samtools-coordinate.metrics.txt Picard DuplicationMetrics GSM1481260 /home/siebrenf/tdewijs/results/qc/markdup/GRCg6a-GSM1481260.samtools-coordinate.metrics.txt Picard DuplicationMetrics GSM1481262 /home/siebrenf/tdewijs/results/qc/markdup/GRCg6a-GSM1481262.samtools-coordinate.metrics.txt SamTools pre-sieve stats GSM1481260 /home/siebrenf/tdewijs/results/qc/samtools_stats/star/GRCg6a-GSM1481260.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats GSM1481261 /home/siebrenf/tdewijs/results/qc/samtools_stats/star/GRCg6a-GSM1481261.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats GSM1481263 /home/siebrenf/tdewijs/results/qc/samtools_stats/star/GRCg6a-GSM1481263.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats GSM1481262 /home/siebrenf/tdewijs/results/qc/samtools_stats/star/GRCg6a-GSM1481262.samtools-coordinate.samtools_stats.txt deepTools plotPCA GRCg6a /home/siebrenf/tdewijs/results/qc/plotPCA/GRCg6a.tsv deepTools plotFingerprint GRCg6a /home/siebrenf/tdewijs/results/qc/plotFingerprint/GRCg6a.tsv Strandedness infer_experiment GSM1481262.strandedness /home/siebrenf/tdewijs/results/qc/strandedness/GRCg6a-GSM1481262.strandedness.txt Strandedness infer_experiment GSM1481263.strandedness /home/siebrenf/tdewijs/results/qc/strandedness/GRCg6a-GSM1481263.strandedness.txt Strandedness infer_experiment GSM1481260.strandedness /home/siebrenf/tdewijs/results/qc/strandedness/GRCg6a-GSM1481260.strandedness.txt Strandedness infer_experiment GSM1481261.strandedness /home/siebrenf/tdewijs/results/qc/strandedness/GRCg6a-GSM1481261.strandedness.txt mtnucratio all_sections GSM1481262 /home/siebrenf/tdewijs/results/star/GRCg6a-GSM1481262.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections GSM1481263 /home/siebrenf/tdewijs/results/star/GRCg6a-GSM1481263.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections GSM1481261 /home/siebrenf/tdewijs/results/star/GRCg6a-GSM1481261.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections GSM1481260 /home/siebrenf/tdewijs/results/star/GRCg6a-GSM1481260.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json