Module Section Sample Name Source MACS2 all_sections GSM1689671 /home/siebrenf/git/seq2science/results/macs2/dm6-GSM1689671_peaks.xls MACS2 all_sections GSM1689692 /home/siebrenf/git/seq2science/results/macs2/dm6-GSM1689692_peaks.xls fastp all_sections GSM1689671 /home/siebrenf/git/seq2science/results/qc/trimming/GSM1689671.fastp.json fastp all_sections GSM1689692 /home/siebrenf/git/seq2science/results/qc/trimming/GSM1689692.fastp.json Picard DuplicationMetrics GSM1689692 /home/siebrenf/git/seq2science/results/qc/markdup/dm6-GSM1689692.samtools-coordinate.metrics.txt Picard DuplicationMetrics GSM1689671 /home/siebrenf/git/seq2science/results/qc/markdup/dm6-GSM1689671.samtools-coordinate.metrics.txt SamTools pre-sieve stats GSM1689671 /home/siebrenf/git/seq2science/results/qc/samtools_stats/bwa-mem2/dm6-GSM1689671.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats GSM1689692 /home/siebrenf/git/seq2science/results/qc/samtools_stats/bwa-mem2/dm6-GSM1689692.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats GSM1689692 /home/siebrenf/git/seq2science/results/qc/samtools_stats/final_bam/dm6-GSM1689692.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats GSM1689671 /home/siebrenf/git/seq2science/results/qc/samtools_stats/final_bam/dm6-GSM1689671.samtools-coordinate.samtools_stats.txt deepTools plotPCA dm6 /home/siebrenf/git/seq2science/results/qc/plotPCA/dm6.tsv deepTools plotFingerprint dm6 /home/siebrenf/git/seq2science/results/qc/plotFingerprint/dm6.tsv deepTools plotProfile macs2 /home/siebrenf/git/seq2science/results/qc/plotProfile_gene/dm6-macs2.tsv macs2_frips all_sections GSM1689671 /home/siebrenf/git/seq2science/results/qc/macs2/dm6-GSM1689671_featureCounts.txt.summary macs2_frips all_sections GSM1689692 /home/siebrenf/git/seq2science/results/qc/macs2/dm6-GSM1689692_featureCounts.txt.summary mtnucratio all_sections GSM1689692 /home/siebrenf/git/seq2science/results/bwa-mem2/dm6-GSM1689692.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections GSM1689671 /home/siebrenf/git/seq2science/results/bwa-mem2/dm6-GSM1689671.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json