10.1093/bioinformatics/btw354 # MultiQC 10.1101/496521 # macs 10.1186/gb-2008-9-9-r137 # macs 10.1093/bioinformatics/bty560 # fastp 10.1093/bioinformatics/btp352 # Samtools 10.1093/bioinformatics/btp352 # Samtools-1 10.1093/nar/gkw257 # deepTools 10.1093/bioinformatics/btt656 # featurecounts 10.1186/s13059-016-0918-z # mtnucratio