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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        Tool Citations

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        About MultiQC

        This report was generated using MultiQC, version 1.15

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-06-26, 10:39 CEST based on data in: /scratch/slrinzema/tmp/Nicola_Hetherington

        General Statistics

        Showing 8/8 rows and 5/7 columns.
        Sample Name% DuplicationM Reads After FilteringGC content% PF% Adapter
        47849_0037_Mouse_Liver_SPF_Nuclei__19M_F_CutRun_commercial_NH_H3K27me3_i701_i501
        10.4%
        8.0
        43.3%
        99.4%
        0.7%
        47850_0038_Mouse_Liver_SPF_Nuclei__19M_F_CutRun_05_NH_H3K27me3_i702_i501
        8.9%
        13.3
        43.8%
        99.5%
        0.7%
        47851_0039_Mouse_Liver_SPF_Nuclei__2M_F_CutRun_Mouse_IgG_i703_i502
        10.3%
        9.9
        43.5%
        99.6%
        2.2%
        47852_0040_Mouse_Liver_SPF_Nuclei__2M_F_CutRun_H4K16ac_i704_i502
        9.9%
        19.4
        42.8%
        99.6%
        2.0%
        47853_0041_Mouse_Liver_SPF_Nuclei__2M_F_CutRun_H3K36me3_i705_i502
        9.1%
        11.1
        44.3%
        99.5%
        2.0%
        47854_0042_Mouse_Liver_SPF_Nuclei_FF1808__19M_F_CutRun_No_Antibody_i703_i503
        11.7%
        13.2
        47.1%
        99.2%
        1.5%
        47855_0043_Mouse_Liver_SPF_Nuclei_FF1808__19M_F_CutRun_H4K16ac_i704_i503
        7.3%
        1.6
        42.7%
        99.5%
        0.8%
        47856_0044_Mouse_Liver_SPF_Nuclei_FF1808__19M_F_CutRun_H3K36me3_i705_i503
        10.4%
        19.8
        44.8%
        99.4%
        2.7%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).DOI: 10.1093/bioinformatics/bty560.

        Filtered Reads

        Filtering statistics of sampled reads.

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        Insert Sizes

        Insert size estimation of sampled reads.

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        Sequence Quality

        Average sequencing quality over each base of all reads.

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        GC Content

        Average GC content over each base of all reads.

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        N content

        Average N content over each base of all reads.

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        MultiQC v1.15 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.