2025-08-27 15:31:32,540 - INFO - Starting maelstrom
2025-08-27 15:31:32,555 - INFO - Input is not mean-centered, setting the mean of all rows to 0.
2025-08-27 15:31:32,555 - INFO - Use --nocenter if you know what you're doing and want to change this behavior.
2025-08-27 15:31:32,555 - INFO - Note that if you use count data (ChIP-seq, ATAC-seq) we recommend to first transform your data, for instance using log2(), and to normalize between samples. To create a table suitable for maelstrom you can use the coverage_table script included with GimmeMotifs.
2025-08-27 15:31:32,620 - INFO - motif scanning (counts)
2025-08-27 15:31:32,621 - INFO - reading table
2025-08-27 15:31:35,245 - INFO - setting threshold
2025-08-27 15:31:41,981 - INFO - creating count table
2025-08-27 15:32:37,215 - INFO - done
2025-08-27 15:32:37,216 - INFO - creating dataframe
2025-08-27 15:32:49,241 - INFO - motif scanning (scores)
2025-08-27 15:32:49,242 - INFO - reading table
2025-08-27 15:32:56,288 - INFO - creating score table (z-score, GC%)
2025-08-27 15:35:26,891 - INFO - done
2025-08-27 15:35:26,892 - INFO - creating dataframe
2025-08-27 15:37:48,623 - WARNING - Skipping xgboost. Reason: Optional dependency xgboost is required.
2025-08-27 15:37:52,450 - INFO - Fitting BayesianRidge

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 33%|███▎      | 1/3 [00:07<00:15,  7.52s/it]
 67%|██████▋   | 2/3 [00:14<00:07,  7.35s/it]
100%|██████████| 3/3 [00:22<00:00,  7.37s/it]
100%|██████████| 3/3 [00:22<00:00,  7.38s/it]
2025-08-27 15:38:15,256 - INFO - Done
2025-08-27 15:38:19,231 - INFO - Fitting MultiTaskLasso
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 105910.26259210706, tolerance: 21473.875699496566
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 53230.55405583978, tolerance: 21217.314592965653
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 82775.25726914406, tolerance: 21229.273666848487
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 65097.07515895367, tolerance: 20859.70837740763
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 305846.50914132595, tolerance: 21473.875699496566
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 167063.22372114658, tolerance: 20885.709699505893
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 142014.57377180457, tolerance: 21217.314592965653
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 81311.02572572231, tolerance: 21229.273666848487
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 138972.31536331773, tolerance: 20859.70837740763
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 302411.44566968083, tolerance: 21473.875699496566
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 189592.4636771083, tolerance: 20885.709699505893
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 487364.02547749877, tolerance: 21217.314592965653
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 79760.33250188828, tolerance: 21229.273666848487
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 118680.59301671386, tolerance: 20859.70837740763
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 452913.3071475327, tolerance: 21473.875699496566
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 185906.64410835505, tolerance: 20885.709699505893
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 684623.6564629525, tolerance: 21217.314592965653
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 160000.9203285277, tolerance: 21229.273666848487
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 168002.0981527269, tolerance: 20859.70837740763
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 396974.0985623598, tolerance: 21473.875699496566
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 354747.79139107466, tolerance: 20885.709699505893
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 1459908.8312999457, tolerance: 21217.314592965653
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 525583.615768224, tolerance: 21229.273666848487
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 324771.1949813962, tolerance: 20859.70837740763
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 791075.25207901, tolerance: 21473.875699496566
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 1122307.4821395576, tolerance: 21217.314592965653
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 941179.3597775549, tolerance: 20885.709699505893
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 601221.5391405523, tolerance: 21229.273666848487
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 833607.4055957645, tolerance: 20859.70837740763
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 217048.03132101893, tolerance: 21473.875699496566
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 1163874.5375292748, tolerance: 21217.314592965653
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 855791.8127586246, tolerance: 20885.709699505893
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 284109.14271885157, tolerance: 21229.273666848487
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 324122.1087221801, tolerance: 20859.70837740763
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 279322.7089263499, tolerance: 21473.875699496566
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 1082032.1394099146, tolerance: 20885.709699505893
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 453305.6865725368, tolerance: 21217.314592965653
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 567211.9786216915, tolerance: 21229.273666848487
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 637529.0786789358, tolerance: 20859.70837740763
  _warn(*args, **kwargs)
2025-08-27 18:32:19,161 - INFO - Done
2025-08-27 18:32:23,113 - INFO - Fitting SVR
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: FutureWarning: The default value of `dual` will change from `True` to `'auto'` in 1.5. Set the value of `dual` explicitly to suppress the warning.
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: FutureWarning: The default value of `dual` will change from `True` to `'auto'` in 1.5. Set the value of `dual` explicitly to suppress the warning.
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: FutureWarning: The default value of `dual` will change from `True` to `'auto'` in 1.5. Set the value of `dual` explicitly to suppress the warning.
  _warn(*args, **kwargs)
2025-08-27 18:34:34,889 - INFO - Done
2025-08-27 18:34:34,909 - INFO - Rank aggregation
2025-08-27 18:34:36,084 - INFO - Correlation
2025-08-27 18:34:43,200 - INFO - html report
2025-08-27 18:46:47,952 - INFO - out_mg_nr/gimme.maelstrom.report.html