2025-08-27 11:56:43,181 - INFO - Starting maelstrom
2025-08-27 11:56:43,196 - INFO - Input is not mean-centered, setting the mean of all rows to 0.
2025-08-27 11:56:43,196 - INFO - Use --nocenter if you know what you're doing and want to change this behavior.
2025-08-27 11:56:43,196 - INFO - Note that if you use count data (ChIP-seq, ATAC-seq) we recommend to first transform your data, for instance using log2(), and to normalize between samples. To create a table suitable for maelstrom you can use the coverage_table script included with GimmeMotifs.
2025-08-27 11:56:43,259 - INFO - motif scanning (counts)
2025-08-27 11:56:43,259 - INFO - reading table
2025-08-27 11:56:43,506 - INFO - using 14000 sequences
2025-08-27 11:56:59,965 - INFO - setting threshold
2025-08-27 11:57:03,431 - INFO - creating count table
2025-08-27 11:57:08,386 - INFO - done
2025-08-27 11:57:08,386 - INFO - creating dataframe
2025-08-27 11:57:08,712 - INFO - motif scanning (scores)
2025-08-27 11:57:08,712 - INFO - reading table
2025-08-27 11:57:09,167 - INFO - creating score table (z-score, GC%)
2025-08-27 11:57:18,039 - INFO - done
2025-08-27 11:57:18,039 - INFO - creating dataframe
2025-08-27 11:57:19,723 - WARNING - Skipping xgboost. Reason: Optional dependency xgboost is required.
2025-08-27 11:57:19,790 - INFO - Fitting BayesianRidge

  0%|          | 0/3 [00:00<?, ?it/s]
100%|██████████| 3/3 [00:00<00:00, 45.84it/s]
2025-08-27 11:57:19,868 - INFO - Done
2025-08-27 11:57:19,989 - INFO - Fitting MultiTaskLasso
2025-08-27 11:57:27,503 - INFO - Done
2025-08-27 11:57:27,604 - INFO - Fitting SVR
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: FutureWarning: The default value of `dual` will change from `True` to `'auto'` in 1.5. Set the value of `dual` explicitly to suppress the warning.
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: FutureWarning: The default value of `dual` will change from `True` to `'auto'` in 1.5. Set the value of `dual` explicitly to suppress the warning.
  _warn(*args, **kwargs)
/home/siebrenf/miniconda3/envs/gimme2/lib/python3.10/site-packages/gimmemotifs/__init__.py:30: FutureWarning: The default value of `dual` will change from `True` to `'auto'` in 1.5. Set the value of `dual` explicitly to suppress the warning.
  _warn(*args, **kwargs)
2025-08-27 11:57:27,811 - INFO - Done
2025-08-27 11:57:27,816 - INFO - Rank aggregation
2025-08-27 11:57:28,245 - INFO - Correlation
2025-08-27 11:57:28,505 - INFO - html report
2025-08-27 11:57:37,578 - INFO - out/gimme.maelstrom.report.html