name: GRCm38.p6
provider: NCBI
original name: GRCm38.p6
original filename: GCF_000001635.26_GRCm38.p6_genomic.fna.gz
assembly_accession: GCF_000001635.26
tax_id: 10090
mask: soft
genome url: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.26_GRCm38.p6/GCF_000001635.26_GRCm38.p6_genomic.fna.gz
annotation url: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.26_GRCm38.p6/GCF_000001635.26_GRCm38.p6_genomic.gff.gz
sanitized annotation: 117 contigs were renamed. 95 contigs were removed (see below).
genomepy version: 0.16.1
date: 2023-09-18 15:36:47
regex: 'alt' (inverted match)

The following contigs were filtered out of the genome:
129P2/OLAHSD_MMCHR19_CTG1, 129S1/SVIMJ_MMCHR2_CTG2, 129S1/SVIMJ_MMCHR3_CTG2, 129S1/SVIMJ_MMCHR3_CTG3, 129S1/SVIMJ_MMCHR3_CTG4, 129S1/SVIMJ_MMCHR5_CTG5, 129S1/SVIMJ_MMCHR6_CTG1, 129S1/SVIMJ_MMCHR6_CTG5, 129S1/SVIMJ_MMCHR7_CTG1, 129S1/SVIMJ_MMCHR12_CTG3, 129S1/SVIMJ_MMCHR12_CTG1, 129S1/SVIMJ_MMCHR13_CTG1, 129S1/SVIMJ_MMCHR14_CTG3, 129S1/SVIMJ_MMCHR16_CTG1, 129S1/SVIMJ_MMCHR16_CTG2, 129S1/SVIMJ_MMCHR17_CTG2, 129S1/SVIMJ_MMCHR17_CTG3, 129S1/SVIMJ_MMCHR17_CTG4, 129S1/SVIMJ_MMCHRX_CTG3, 129S1/SVIMJ_MMCHRX_CTG7, 129S1/SVIMJ_MMCHRX_CTG10, 129S2/SVPAS_MMCHR7_CTG1, 129S6/SVEVTAC_MMCHR1_CTG1, 129S6/SVEVTAC_MMCHR1_CTG3, 129S6/SVEVTAC_MMCHR1_CTG4, 129S6/SVEVTAC_MMCHR4_CTG1, 129S6/SVEVTAC_MMCHR5_CTG1, 129S6/SVEVTAC_MMCHR8_CTG1, 129S6/SVEVTAC_MMCHR8_CTG2, 129S6/SVEVTAC_MMCHR11_CTG1, 129S6/SVEVTAC_MMCHR13_CTG1, 129S6/SVEVTAC_MMCHR15_CTG1, 129S6/SVEVTAC_MMCHR16_CTG1, 129S6/SVEVTAC_MMCHR16_CTG2, 129S6/SVEVTAC_MMCHR16_CTG3, 129S6/SVEVTAC_MMCHR16_CTG6, 129S6/SVEVTAC_MMCHR16_CTG4, 129S6/SVEVTAC_MMCHR16_CTG5, 129S6/SVEVTAC_MMCHR17_CTG1, 129S6/SVEVTAC_MMCHR17_CTG2, 129S6/SVEVTAC_MMCHRX_CTG2, 129S6/SVEVTAC_MMCHRX_CTG6, 129X1/SVJ_MMCHR1_CTG1, 129X1/SVJ_MMCHR1_CTG2, 129X1/SVJ_MMCHR4_CTG2, 129X1/SVJ_MMCHR6_CTG1, 129X1/SVJ_MMCHR6_CTG3, 129X1/SVJ_MMCHR11_CTG3, 129X1/SVJ_MMCHR14_CTG1, 129X1/SVJ_MMCHR16_CTG1, 129X1/SVJ_MMCHR17_CTG2, A/J_MMCHR13_CTG1, AKR/J_MMCHRY_CTG1, AKR/J_MMCHRY_CTG2, AKR/J_MMCHRY_CTG3, BALB/C_MMCHR7_CTG1, BALB/C_MMCHR12_CTG1, CAST/EI_MMCHR11_CTG1, CAST/EI_MMCHR11_CTG3, CAST/EI_MMCHR18_CTG1, CAST/EI_MMCHRY_CTG1, CAST/EI_MMCHRY_CTG2, CAST/EI_MMCHRY_CTG3, MMCHR1_NOD_IDD5_1, MMCHR1_NOD_IDD5_3, MMCHR1_NOD_IDD5_4, MMCHR3_NOD_IDD3_1, MMCHR3_NODMRKTAC_CTG1, MMCHR3_NODMRKTAC_CTG2, MMCHR3_NOD_IDD10_1, MMCHR3_NOD_IDD18_2, MMCHR3_NOD_IDD18_1, MMCHR4_NOD_IDD9_1, MMCHR4_NOD_IDD9_1M, MMCHR4_NOD_IDD9_2, MMCHR4_NOD_IDD9_3, MMCHR11_NOD_IDD4_1, MMCHR11_NOD_IDD4_2, MMCHR17_NOD_IDD1, MMCHRUN_NODMRKTAC_CTG1, MMCHR6_CHORI29_IDD6_3, MMCHR6_CHORI29_IDD6_1+2, MMCHR11_CHORI29_IDD4_2Q, MMCHR17_CHORI29_IDD16_1, MMCHR17_CHO_IDD1, RIII_MMCHR12_CTG1, RIII_MMCHR18_CTG1, UNKNOWN_MMCHR4_CTG1, UNKNOWN_MMCHR4_CTG7, UNKNOWN_MMCHR10_CTG3, UNKNOWN_MMCHR17_CTG3, UNKNOWN_MMCHR19_CTG2, 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG6, 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG5, 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG4, 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG2, 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG3, 129S7/SVEVBRD-HPRT-B-M2_MMCHR12_CTG2, 129S7/SVEVBRD-HPRT-B-M2_MMCHR15_CTG1

The following contigs were filtered out of the gene annotation:
NT_187024.1, NT_187020.1, NT_166396.1, NT_166398.1, NT_039256.1, NT_080257.1, NT_039373.1, NT_187027.1, NT_099024.1, NT_039697.1, NT_187009.1, NT_039622.1, NT_039372.2, NT_166433.1, NT_187000.1, NT_187004.1, NT_096355.1, NT_166317.2, NT_187018.1, NT_039198.1, NT_039248.1, NT_039334.1, NT_039614.1, NT_039662.3, NT_039443.1, NT_095534.1, NT_187017.1, NT_114988.1, NT_187019.1, NT_166287.2, NT_187010.1, NT_109318.2, NT_039739.2, NT_187005.1, NT_166399.1, NT_039195.1, NT_187012.1, NT_187025.1, NT_039747.4, NT_039291.1, NT_039469.1, NT_166397.1, NT_187014.1, NT_187001.1, NT_039666.2, NT_187026.1, NT_166299.2, NT_111920.1, NT_186999.1, NT_187021.1, NT_114985.3, NT_187029.1, NT_039634.4, NT_166305.2, NT_039194.5, NT_187022.1, NT_078572.1, NT_096797.1, NT_187028.1, NT_039247.2, NT_039594.3, NT_039593.1, NT_187030.1, NT_039382.4, NT_039744.2, NT_039661.4, NT_187003.1, NT_039630.5, NT_187015.1, NT_039192.2, NT_187006.1, NT_097336.1, NT_080256.1, NT_039296.1, NT_166394.1, NT_187016.1, NT_039223.3, NT_078683.1, NT_039525.1, NT_166295.1, NT_187007.1, NT_187008.1, NT_187023.1, NT_187013.1, NT_109599.1, NT_187002.1, NT_039367.1, NT_114257.4, NT_039252.1, NT_166293.1, NT_187011.1, NT_166400.1, NT_039470.1, NT_166322.1, NT_166294.1