Config rna_samples : /bank/experiments/2022-04-jordi/orthofinder/rna_samples.tsv rna_tpms : /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv rna_counts : /bank/experiments/2022-04-jordi/orthofinder/counts_per_replicate_cluster.tsv atac_samples : /bank/experiments/2022-04-jordi/orthofinder/atac_samples.tsv atac_counts : /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv genome : /bank/genomes/Smed result_dir : /bank/experiments/2022-04-jordi/orthofinder tmp_dir : /bank/experiments/2022-04-jordi/orthofinder/tmp contrasts : ['celltype_parenchymal_neoblasts', 'celltype_secretory_neoblasts', 'celltype_phagocytes_neoblasts', 'celltype_muscle.body_neoblasts', 'celltype_muscle.pharynx_neoblasts', 'celltype_muscle.body_muscle.pharynx', 'celltype_neurons_neoblasts', 'celltype_goblet_neoblasts', 'celltype_pharynx_neoblasts', 'celltype_protonephridia_neoblasts', 'celltype_early.epidermis_neoblasts', 'celltype_intermediate.epidermis_early.epidermis', 'celltype_epidermis_intermediate.epidermis'] database : JASPAR2022_vertebrates keep_tmp_data : True jaccard : 0.2 edges : 500000 padj : 0.05 plot_type : png Resources mem_mb : 40000 _cores : 12 deseq2 : 1 Conditions parenchymal : RNA-seq samples: ['ACME_cluster2', 'sample7_cluster2', 'sample8_cluster2', 'ACME_cluster21', 'sample7_cluster21', 'sample8_cluster21', 'ACME_cluster33', 'sample7_cluster33', 'sample8_cluster33', 'ACME_cluster36', 'sample7_cluster36', 'sample8_cluster36'] ATAC-seq samples: ['DeduplicatedCluster3'] neoblasts : RNA-seq samples: ['ACME_cluster1', 'sample7_cluster1', 'sample8_cluster1', 'ACME_cluster4', 'sample7_cluster4', 'sample8_cluster4', 'ACME_cluster5', 'sample7_cluster5', 'sample8_cluster5', 'ACME_cluster30', 'sample7_cluster30', 'sample8_cluster30'] ATAC-seq samples: ['DeduplicatedCluster1'] secretory : RNA-seq samples: ['ACME_cluster22', 'sample7_cluster22', 'sample8_cluster22', 'ACME_cluster23', 'sample7_cluster23', 'sample8_cluster23', 'ACME_cluster26', 'sample7_cluster26', 'sample8_cluster26', 'ACME_cluster27', 'sample7_cluster27', 'sample8_cluster27', 'ACME_cluster37', 'sample7_cluster37', 'sample8_cluster37', 'ACME_cluster41', 'sample7_cluster41', 'sample8_cluster41', 'ACME_cluster42', 'sample7_cluster42', 'sample8_cluster42', 'ACME_cluster46', 'sample7_cluster46', 'sample8_cluster46'] ATAC-seq samples: ['DeduplicatedCluster8'] phagocytes : RNA-seq samples: ['ACME_cluster3', 'sample7_cluster3', 'sample8_cluster3'] ATAC-seq samples: ['DeduplicatedCluster7'] muscle.body : RNA-seq samples: ['ACME_cluster7', 'sample7_cluster7', 'sample8_cluster7', 'ACME_cluster9', 'sample7_cluster9', 'sample8_cluster9'] ATAC-seq samples: ['DeduplicatedCluster2'] muscle.pharynx : RNA-seq samples: ['ACME_cluster15', 'sample7_cluster15', 'sample8_cluster15', 'ACME_cluster16', 'sample7_cluster16', 'sample8_cluster16'] ATAC-seq samples: ['DeduplicatedCluster6'] neurons : RNA-seq samples: ['ACME_cluster0', 'sample7_cluster0', 'sample8_cluster0', 'ACME_cluster10', 'sample7_cluster10', 'sample8_cluster10', 'ACME_cluster29', 'sample7_cluster29', 'sample8_cluster29', 'ACME_cluster31', 'sample7_cluster31', 'sample8_cluster31', 'ACME_cluster43', 'sample7_cluster43', 'sample8_cluster43', 'ACME_cluster44', 'sample7_cluster44', 'sample8_cluster44', 'ACME_cluster47', 'sample7_cluster47', 'sample8_cluster47'] ATAC-seq samples: ['DeduplicatedCluster0'] goblet : RNA-seq samples: ['ACME_cluster34', 'sample7_cluster34', 'sample8_cluster34'] ATAC-seq samples: ['DeduplicatedCluster12'] pharynx : RNA-seq samples: ['ACME_cluster17', 'sample7_cluster17', 'sample8_cluster17'] ATAC-seq samples: ['DeduplicatedCluster4'] protonephridia : RNA-seq samples: ['ACME_cluster20', 'sample7_cluster20', 'sample8_cluster20', 'ACME_cluster35', 'sample7_cluster35', 'sample8_cluster35'] ATAC-seq samples: ['DeduplicatedCluster11'] early.epidermis : RNA-seq samples: ['ACME_cluster14', 'sample7_cluster14', 'sample8_cluster14', 'ACME_cluster18', 'sample7_cluster18', 'sample8_cluster18', 'ACME_cluster45', 'sample7_cluster45', 'sample8_cluster45'] ATAC-seq samples: ['DeduplicatedCluster5'] intermediate.epidermis : RNA-seq samples: ['ACME_cluster6', 'sample7_cluster6', 'sample8_cluster6', 'ACME_cluster13', 'sample7_cluster13', 'sample8_cluster13', 'ACME_cluster49', 'sample7_cluster49', 'sample8_cluster49'] ATAC-seq samples: ['DeduplicatedCluster10'] epidermis : RNA-seq samples: ['ACME_cluster11', 'sample7_cluster11', 'sample8_cluster11', 'ACME_cluster12', 'sample7_cluster12', 'sample8_cluster12'] ATAC-seq samples: ['DeduplicatedCluster9'] Building DAG of jobs... Using shell: /bin/bash Provided cores: 12 Rules claiming more threads will be scaled down. Provided resources: mem_mb=40000, deseq2=1 Job counts: count jobs 1 all 13 binding 13 influence 13 network 1 pfmscorefile 13 plot 54 [Fri Apr 1 17:12:45 2022] rule pfmscorefile: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv log: /bank/experiments/2022-04-jordi/orthofinder/gimme/log_Smed_pfmscorefile.txt jobid: 67 threads: 12 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/2739dbdf [Fri Apr 1 17:29:49 2022] Finished job 67. 1 of 54 steps (2%) done [Fri Apr 1 17:29:49 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/pharynx.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_pharynx.txt jobid: 61 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_pharynx.txt wildcards: condition=pharynx resources: mem_mb=40000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 17:31:25 2022] Finished job 61. 2 of 54 steps (4%) done [Fri Apr 1 17:31:25 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/pharynx.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/pharynx.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_pharynx.txt jobid: 43 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_pharynx.txt wildcards: condition=pharynx resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 17:37:45 2022] Finished job 43. 3 of 54 steps (6%) done [Fri Apr 1 17:37:45 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/epidermis.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_epidermis.txt jobid: 65 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_epidermis.txt wildcards: condition=epidermis resources: mem_mb=40000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 17:39:18 2022] Finished job 65. 4 of 54 steps (7%) done [Fri Apr 1 17:39:18 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/epidermis.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/epidermis.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_epidermis.txt jobid: 51 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_epidermis.txt wildcards: condition=epidermis resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 17:45:38 2022] Finished job 51. 5 of 54 steps (9%) done [Fri Apr 1 17:45:38 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/neoblasts.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_neoblasts.txt jobid: 53 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_neoblasts.txt wildcards: condition=neoblasts resources: mem_mb=40000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 17:47:08 2022] Finished job 53. 6 of 54 steps (11%) done [Fri Apr 1 17:47:08 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/neoblasts.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/neoblasts.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_neoblasts.txt jobid: 27 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_neoblasts.txt wildcards: condition=neoblasts resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 17:53:30 2022] Finished job 27. 7 of 54 steps (13%) done [Fri Apr 1 17:53:30 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/pharynx.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_pharynx_neoblasts.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_pharynx_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_pharynx_neoblasts_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_pharynx_neoblasts.txt jobid: 22 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_pharynx_neoblasts.txt wildcards: contrast=celltype_pharynx_neoblasts resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 17:58:33 2022] Finished job 22. 8 of 54 steps (15%) done [Fri Apr 1 17:58:33 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/muscle.body.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_muscle.body.txt jobid: 57 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_muscle.body.txt wildcards: condition=muscle.body resources: mem_mb=40000 [Fri Apr 1 17:58:33 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_pharynx_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_pharynx_neoblasts_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_pharynx_neoblasts.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_pharynx_neoblasts.txt jobid: 9 wildcards: contrast=celltype_pharynx_neoblasts Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 17:58:44 2022] Finished job 9. 9 of 54 steps (17%) done [Fri Apr 1 18:00:06 2022] Finished job 57. 10 of 54 steps (19%) done [Fri Apr 1 18:00:06 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/muscle.body.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/muscle.body.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_muscle.body.txt jobid: 34 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_muscle.body.txt wildcards: condition=muscle.body resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:06:22 2022] Finished job 34. 11 of 54 steps (20%) done [Fri Apr 1 18:06:22 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/muscle.body.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_muscle.body_neoblasts.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.body_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.body_neoblasts_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_muscle.body_neoblasts.txt jobid: 17 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_muscle.body_neoblasts.txt wildcards: contrast=celltype_muscle.body_neoblasts resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:12:52 2022] Finished job 17. 12 of 54 steps (22%) done [Fri Apr 1 18:12:52 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/secretory.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_secretory.txt jobid: 55 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_secretory.txt wildcards: condition=secretory resources: mem_mb=40000 [Fri Apr 1 18:12:52 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.body_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.body_neoblasts_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_muscle.body_neoblasts.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_muscle.body_neoblasts.txt jobid: 4 wildcards: contrast=celltype_muscle.body_neoblasts Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:13:04 2022] Finished job 4. 13 of 54 steps (24%) done [Fri Apr 1 18:14:25 2022] Finished job 55. 14 of 54 steps (26%) done [Fri Apr 1 18:14:25 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/secretory.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/secretory.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_secretory.txt jobid: 30 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_secretory.txt wildcards: condition=secretory resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:20:43 2022] Finished job 30. 15 of 54 steps (28%) done [Fri Apr 1 18:20:43 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/secretory.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_secretory_neoblasts.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_secretory_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_secretory_neoblasts_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_secretory_neoblasts.txt jobid: 15 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_secretory_neoblasts.txt wildcards: contrast=celltype_secretory_neoblasts resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:25:18 2022] Finished job 15. 16 of 54 steps (30%) done [Fri Apr 1 18:25:18 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/goblet.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_goblet.txt jobid: 60 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_goblet.txt wildcards: condition=goblet resources: mem_mb=40000 [Fri Apr 1 18:25:18 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_secretory_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_secretory_neoblasts_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_secretory_neoblasts.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_secretory_neoblasts.txt jobid: 2 wildcards: contrast=celltype_secretory_neoblasts Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:25:36 2022] Finished job 2. 17 of 54 steps (31%) done [Fri Apr 1 18:26:49 2022] Finished job 60. 18 of 54 steps (33%) done [Fri Apr 1 18:26:49 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/goblet.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/goblet.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_goblet.txt jobid: 41 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_goblet.txt wildcards: condition=goblet resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:33:02 2022] Finished job 41. 19 of 54 steps (35%) done [Fri Apr 1 18:33:02 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/goblet.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_goblet_neoblasts.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_goblet_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_goblet_neoblasts_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_goblet_neoblasts.txt jobid: 21 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_goblet_neoblasts.txt wildcards: contrast=celltype_goblet_neoblasts resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:37:39 2022] Finished job 21. 20 of 54 steps (37%) done [Fri Apr 1 18:37:39 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/parenchymal.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_parenchymal.txt jobid: 54 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_parenchymal.txt wildcards: condition=parenchymal resources: mem_mb=40000 [Fri Apr 1 18:37:39 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_goblet_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_goblet_neoblasts_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_goblet_neoblasts.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_goblet_neoblasts.txt jobid: 8 wildcards: contrast=celltype_goblet_neoblasts Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:37:55 2022] Finished job 8. 21 of 54 steps (39%) done [Fri Apr 1 18:39:10 2022] Finished job 54. 22 of 54 steps (41%) done [Fri Apr 1 18:39:10 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/parenchymal.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/parenchymal.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_parenchymal.txt jobid: 28 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_parenchymal.txt wildcards: condition=parenchymal resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:45:13 2022] Finished job 28. 23 of 54 steps (43%) done [Fri Apr 1 18:45:13 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/parenchymal.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_parenchymal_neoblasts.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_parenchymal_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_parenchymal_neoblasts_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_parenchymal_neoblasts.txt jobid: 14 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_parenchymal_neoblasts.txt wildcards: contrast=celltype_parenchymal_neoblasts resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:49:15 2022] Finished job 14. 24 of 54 steps (44%) done [Fri Apr 1 18:49:15 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/protonephridia.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_protonephridia.txt jobid: 62 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_protonephridia.txt wildcards: condition=protonephridia resources: mem_mb=40000 [Fri Apr 1 18:49:15 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_parenchymal_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_parenchymal_neoblasts_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_parenchymal_neoblasts.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_parenchymal_neoblasts.txt jobid: 1 wildcards: contrast=celltype_parenchymal_neoblasts Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:49:31 2022] Finished job 1. 25 of 54 steps (46%) done [Fri Apr 1 18:50:49 2022] Finished job 62. 26 of 54 steps (48%) done [Fri Apr 1 18:50:49 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/protonephridia.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/protonephridia.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_protonephridia.txt jobid: 45 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_protonephridia.txt wildcards: condition=protonephridia resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 18:56:59 2022] Finished job 45. 27 of 54 steps (50%) done [Fri Apr 1 18:56:59 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/protonephridia.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_protonephridia_neoblasts.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_protonephridia_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_protonephridia_neoblasts_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_protonephridia_neoblasts.txt jobid: 23 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_protonephridia_neoblasts.txt wildcards: contrast=celltype_protonephridia_neoblasts resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:03:10 2022] Finished job 23. 28 of 54 steps (52%) done [Fri Apr 1 19:03:10 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_protonephridia_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_protonephridia_neoblasts_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_protonephridia_neoblasts.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_protonephridia_neoblasts.txt jobid: 10 wildcards: contrast=celltype_protonephridia_neoblasts [Fri Apr 1 19:03:10 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/muscle.pharynx.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_muscle.pharynx.txt jobid: 58 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_muscle.pharynx.txt wildcards: condition=muscle.pharynx resources: mem_mb=40000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:03:28 2022] Finished job 10. 29 of 54 steps (54%) done [Fri Apr 1 19:04:46 2022] Finished job 58. 30 of 54 steps (56%) done [Fri Apr 1 19:04:46 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/muscle.pharynx.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/muscle.pharynx.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_muscle.pharynx.txt jobid: 36 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_muscle.pharynx.txt wildcards: condition=muscle.pharynx resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:11:02 2022] Finished job 36. 31 of 54 steps (57%) done [Fri Apr 1 19:11:02 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/muscle.pharynx.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_muscle.pharynx_neoblasts.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.pharynx_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.pharynx_neoblasts_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_muscle.pharynx_neoblasts.txt jobid: 18 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_muscle.pharynx_neoblasts.txt wildcards: contrast=celltype_muscle.pharynx_neoblasts resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:16:29 2022] Finished job 18. 32 of 54 steps (59%) done [Fri Apr 1 19:16:29 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.pharynx_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.pharynx_neoblasts_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_muscle.pharynx_neoblasts.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_muscle.pharynx_neoblasts.txt jobid: 5 wildcards: contrast=celltype_muscle.pharynx_neoblasts [Fri Apr 1 19:16:29 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/muscle.pharynx.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/muscle.body.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_muscle.body_muscle.pharynx.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.body_muscle.pharynx.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.body_muscle.pharynx_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_muscle.body_muscle.pharynx.txt jobid: 19 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_muscle.body_muscle.pharynx.txt wildcards: contrast=celltype_muscle.body_muscle.pharynx resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:16:40 2022] Finished job 5. 33 of 54 steps (61%) done [Fri Apr 1 19:20:59 2022] Finished job 19. 34 of 54 steps (63%) done [Fri Apr 1 19:20:59 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/phagocytes.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_phagocytes.txt jobid: 56 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_phagocytes.txt wildcards: condition=phagocytes resources: mem_mb=40000 [Fri Apr 1 19:20:59 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.body_muscle.pharynx.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_muscle.body_muscle.pharynx_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_muscle.body_muscle.pharynx.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_muscle.body_muscle.pharynx.txt jobid: 6 wildcards: contrast=celltype_muscle.body_muscle.pharynx Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:21:11 2022] Finished job 6. 35 of 54 steps (65%) done [Fri Apr 1 19:22:32 2022] Finished job 56. 36 of 54 steps (67%) done [Fri Apr 1 19:22:32 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/phagocytes.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/phagocytes.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_phagocytes.txt jobid: 32 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_phagocytes.txt wildcards: condition=phagocytes resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:28:55 2022] Finished job 32. 37 of 54 steps (69%) done [Fri Apr 1 19:28:55 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/phagocytes.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_phagocytes_neoblasts.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_phagocytes_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_phagocytes_neoblasts_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_phagocytes_neoblasts.txt jobid: 16 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_phagocytes_neoblasts.txt wildcards: contrast=celltype_phagocytes_neoblasts resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:34:34 2022] Finished job 16. 38 of 54 steps (70%) done [Fri Apr 1 19:34:34 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_phagocytes_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_phagocytes_neoblasts_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_phagocytes_neoblasts.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_phagocytes_neoblasts.txt jobid: 3 wildcards: contrast=celltype_phagocytes_neoblasts [Fri Apr 1 19:34:34 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/early.epidermis.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_early.epidermis.txt jobid: 63 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_early.epidermis.txt wildcards: condition=early.epidermis resources: mem_mb=40000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:34:44 2022] Finished job 3. 39 of 54 steps (72%) done [Fri Apr 1 19:36:07 2022] Finished job 63. 40 of 54 steps (74%) done [Fri Apr 1 19:36:07 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/early.epidermis.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/early.epidermis.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_early.epidermis.txt jobid: 47 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_early.epidermis.txt wildcards: condition=early.epidermis resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:42:32 2022] Finished job 47. 41 of 54 steps (76%) done [Fri Apr 1 19:42:32 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/early.epidermis.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_early.epidermis_neoblasts.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_early.epidermis_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_early.epidermis_neoblasts_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_early.epidermis_neoblasts.txt jobid: 24 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_early.epidermis_neoblasts.txt wildcards: contrast=celltype_early.epidermis_neoblasts resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:49:55 2022] Finished job 24. 42 of 54 steps (78%) done [Fri Apr 1 19:49:55 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_early.epidermis_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_early.epidermis_neoblasts_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_early.epidermis_neoblasts.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_early.epidermis_neoblasts.txt jobid: 11 wildcards: contrast=celltype_early.epidermis_neoblasts [Fri Apr 1 19:49:55 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/intermediate.epidermis.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_intermediate.epidermis.txt jobid: 64 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_intermediate.epidermis.txt wildcards: condition=intermediate.epidermis resources: mem_mb=40000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:50:07 2022] Finished job 11. 43 of 54 steps (80%) done [Fri Apr 1 19:51:29 2022] Finished job 64. 44 of 54 steps (81%) done [Fri Apr 1 19:51:29 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/intermediate.epidermis.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/intermediate.epidermis.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_intermediate.epidermis.txt jobid: 49 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_intermediate.epidermis.txt wildcards: condition=intermediate.epidermis resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 19:57:28 2022] Finished job 49. 45 of 54 steps (83%) done [Fri Apr 1 19:57:28 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/intermediate.epidermis.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/epidermis.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_epidermis_intermediate.epidermis.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_epidermis_intermediate.epidermis.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_epidermis_intermediate.epidermis_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_epidermis_intermediate.epidermis.txt jobid: 26 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_epidermis_intermediate.epidermis.txt wildcards: contrast=celltype_epidermis_intermediate.epidermis resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 20:04:33 2022] Finished job 26. 46 of 54 steps (85%) done [Fri Apr 1 20:04:33 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_epidermis_intermediate.epidermis.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_epidermis_intermediate.epidermis_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_epidermis_intermediate.epidermis.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_epidermis_intermediate.epidermis.txt jobid: 13 wildcards: contrast=celltype_epidermis_intermediate.epidermis [Fri Apr 1 20:04:33 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/early.epidermis.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/intermediate.epidermis.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_intermediate.epidermis_early.epidermis.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_intermediate.epidermis_early.epidermis.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_intermediate.epidermis_early.epidermis_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_intermediate.epidermis_early.epidermis.txt jobid: 25 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_intermediate.epidermis_early.epidermis.txt wildcards: contrast=celltype_intermediate.epidermis_early.epidermis resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 20:04:46 2022] Finished job 13. 47 of 54 steps (87%) done [Fri Apr 1 20:10:46 2022] Finished job 25. 48 of 54 steps (89%) done [Fri Apr 1 20:10:46 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_intermediate.epidermis_early.epidermis.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_intermediate.epidermis_early.epidermis_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_intermediate.epidermis_early.epidermis.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_intermediate.epidermis_early.epidermis.txt jobid: 12 wildcards: contrast=celltype_intermediate.epidermis_early.epidermis [Fri Apr 1 20:10:46 2022] rule binding: input: /bank/experiments/2022-04-jordi/orthofinder/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/orthofinder/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/orthofinder/gimme/pfmscorefile.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/binding/neurons.h5 log: /bank/experiments/2022-04-jordi/orthofinder/binding/log_neurons.txt jobid: 59 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/binding_neurons.txt wildcards: condition=neurons resources: mem_mb=40000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 20:11:03 2022] Finished job 12. 49 of 54 steps (91%) done [Fri Apr 1 20:12:15 2022] Finished job 59. 50 of 54 steps (93%) done [Fri Apr 1 20:12:15 2022] rule network: input: /bank/experiments/2022-04-jordi/orthofinder/binding/neurons.h5, /bank/experiments/2022-04-jordi/orthofinder/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/network/neurons.tsv log: /bank/experiments/2022-04-jordi/orthofinder/network/log_neurons.txt jobid: 39 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/network_neurons.txt wildcards: condition=neurons resources: network=1, mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 20:18:39 2022] Finished job 39. 51 of 54 steps (94%) done [Fri Apr 1 20:18:39 2022] rule influence: input: /bank/experiments/2022-04-jordi/orthofinder/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/network/neurons.tsv, /bank/experiments/2022-04-jordi/orthofinder/deseq2/Smed-celltype_neurons_neoblasts.diffexp.tsv, /bank/genomes/Smed output: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_neurons_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_neurons_neoblasts_diffnetwork.tsv log: /bank/experiments/2022-04-jordi/orthofinder/influence/log_celltype_neurons_neoblasts.txt jobid: 20 benchmark: /bank/experiments/2022-04-jordi/orthofinder/benchmarks/influence_celltype_neurons_neoblasts.txt wildcards: contrast=celltype_neurons_neoblasts resources: mem_mb=24000 Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 20:23:33 2022] Finished job 20. 52 of 54 steps (96%) done [Fri Apr 1 20:23:33 2022] rule plot: input: /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_neurons_neoblasts.tsv, /bank/experiments/2022-04-jordi/orthofinder/influence/celltype_neurons_neoblasts_diffnetwork.tsv output: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_neurons_neoblasts.png log: /bank/experiments/2022-04-jordi/orthofinder/plot/log_celltype_neurons_neoblasts.txt jobid: 7 wildcards: contrast=celltype_neurons_neoblasts Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a [Fri Apr 1 20:23:43 2022] Finished job 7. 53 of 54 steps (98%) done [Fri Apr 1 20:23:43 2022] localrule all: input: /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_parenchymal_neoblasts.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_secretory_neoblasts.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_phagocytes_neoblasts.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_muscle.body_neoblasts.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_muscle.pharynx_neoblasts.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_muscle.body_muscle.pharynx.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_neurons_neoblasts.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_goblet_neoblasts.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_pharynx_neoblasts.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_protonephridia_neoblasts.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_early.epidermis_neoblasts.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_intermediate.epidermis_early.epidermis.png, /bank/experiments/2022-04-jordi/orthofinder/plot/celltype_epidermis_intermediate.epidermis.png jobid: 0 [Fri Apr 1 20:23:43 2022] Finished job 0. 54 of 54 steps (100%) done Complete log: /home/siebrenf/git/anansnake/.snakemake/log/2022-04-01T171243.057221.snakemake.log