Config
rna_samples            : /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv
rna_tpms               : /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv
rna_counts             : /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
atac_samples           : /bank/experiments/2022-04-jordi/ananse/atac_samples.tsv
atac_counts            : /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv
genome                 : /bank/genomes/Smed
result_dir             : /bank/experiments/2022-04-jordi/ananse
tmp_dir                : /bank/experiments/2022-04-jordi/ananse/tmp
contrasts              : ['celltype_parenchymal_neoblasts', 'celltype_secretory_neoblasts', 'celltype_phagocytes_neoblasts', 'celltype_muscle.body_neoblasts', 'celltype_muscle.pharynx_neoblasts', 'celltype_muscle.body_muscle.pharynx', 'celltype_neurons_neoblasts', 'celltype_goblet_neoblasts', 'celltype_pharynx_neoblasts', 'celltype_protonephridia_neoblasts', 'celltype_early.epidermis_neoblasts', 'celltype_intermediate.epidermis_early.epidermis', 'celltype_epidermis_intermediate.epidermis']
database               : JASPAR2022_vertebrates
keep_tmp_data          : True
jaccard                : 0.2
edges                  : 500000
padj                   : 0.05
plot_type              : png

Resources
mem_mb                 : 40000
_cores                 : 12
deseq2                 : 1

Conditions
parenchymal            :
  RNA-seq samples:  ['ACME_cluster2', 'sample7_cluster2', 'sample8_cluster2', 'ACME_cluster21', 'sample7_cluster21', 'sample8_cluster21', 'ACME_cluster33', 'sample7_cluster33', 'sample8_cluster33', 'ACME_cluster36', 'sample7_cluster36', 'sample8_cluster36']
  ATAC-seq samples: ['DeduplicatedCluster3']
neoblasts              :
  RNA-seq samples:  ['ACME_cluster1', 'sample7_cluster1', 'sample8_cluster1', 'ACME_cluster4', 'sample7_cluster4', 'sample8_cluster4', 'ACME_cluster5', 'sample7_cluster5', 'sample8_cluster5', 'ACME_cluster30', 'sample7_cluster30', 'sample8_cluster30']
  ATAC-seq samples: ['DeduplicatedCluster1']
secretory              :
  RNA-seq samples:  ['ACME_cluster22', 'sample7_cluster22', 'sample8_cluster22', 'ACME_cluster23', 'sample7_cluster23', 'sample8_cluster23', 'ACME_cluster26', 'sample7_cluster26', 'sample8_cluster26', 'ACME_cluster27', 'sample7_cluster27', 'sample8_cluster27', 'ACME_cluster37', 'sample7_cluster37', 'sample8_cluster37', 'ACME_cluster41', 'sample7_cluster41', 'sample8_cluster41', 'ACME_cluster42', 'sample7_cluster42', 'sample8_cluster42', 'ACME_cluster46', 'sample7_cluster46', 'sample8_cluster46']
  ATAC-seq samples: ['DeduplicatedCluster8']
phagocytes             :
  RNA-seq samples:  ['ACME_cluster3', 'sample7_cluster3', 'sample8_cluster3']
  ATAC-seq samples: ['DeduplicatedCluster7']
muscle.body            :
  RNA-seq samples:  ['ACME_cluster7', 'sample7_cluster7', 'sample8_cluster7', 'ACME_cluster9', 'sample7_cluster9', 'sample8_cluster9']
  ATAC-seq samples: ['DeduplicatedCluster2']
muscle.pharynx         :
  RNA-seq samples:  ['ACME_cluster15', 'sample7_cluster15', 'sample8_cluster15', 'ACME_cluster16', 'sample7_cluster16', 'sample8_cluster16']
  ATAC-seq samples: ['DeduplicatedCluster6']
neurons                :
  RNA-seq samples:  ['ACME_cluster0', 'sample7_cluster0', 'sample8_cluster0', 'ACME_cluster10', 'sample7_cluster10', 'sample8_cluster10', 'ACME_cluster29', 'sample7_cluster29', 'sample8_cluster29', 'ACME_cluster31', 'sample7_cluster31', 'sample8_cluster31', 'ACME_cluster43', 'sample7_cluster43', 'sample8_cluster43', 'ACME_cluster44', 'sample7_cluster44', 'sample8_cluster44', 'ACME_cluster47', 'sample7_cluster47', 'sample8_cluster47']
  ATAC-seq samples: ['DeduplicatedCluster0']
goblet                 :
  RNA-seq samples:  ['ACME_cluster34', 'sample7_cluster34', 'sample8_cluster34']
  ATAC-seq samples: ['DeduplicatedCluster12']
pharynx                :
  RNA-seq samples:  ['ACME_cluster17', 'sample7_cluster17', 'sample8_cluster17']
  ATAC-seq samples: ['DeduplicatedCluster4']
protonephridia         :
  RNA-seq samples:  ['ACME_cluster20', 'sample7_cluster20', 'sample8_cluster20', 'ACME_cluster35', 'sample7_cluster35', 'sample8_cluster35']
  ATAC-seq samples: ['DeduplicatedCluster11']
early.epidermis        :
  RNA-seq samples:  ['ACME_cluster14', 'sample7_cluster14', 'sample8_cluster14', 'ACME_cluster18', 'sample7_cluster18', 'sample8_cluster18', 'ACME_cluster45', 'sample7_cluster45', 'sample8_cluster45']
  ATAC-seq samples: ['DeduplicatedCluster5']
intermediate.epidermis :
  RNA-seq samples:  ['ACME_cluster6', 'sample7_cluster6', 'sample8_cluster6', 'ACME_cluster13', 'sample7_cluster13', 'sample8_cluster13', 'ACME_cluster49', 'sample7_cluster49', 'sample8_cluster49']
  ATAC-seq samples: ['DeduplicatedCluster10']
epidermis              :
  RNA-seq samples:  ['ACME_cluster11', 'sample7_cluster11', 'sample8_cluster11', 'ACME_cluster12', 'sample7_cluster12', 'sample8_cluster12']
  ATAC-seq samples: ['DeduplicatedCluster9']

Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 12
Rules claiming more threads will be scaled down.
Provided resources: mem_mb=40000, deseq2=1
Job counts:
	count	jobs
	1	all
	13	binding
	13	deseq2
	13	influence
	13	network
	1	pfmscorefile
	13	plot
	67

[Fri Apr  1 12:45:02 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_muscle.body_muscle.pharynx.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_muscle.body_muscle.pharynx.txt
    jobid: 38
    wildcards: contrast=celltype_muscle.body_muscle.pharynx
    resources: deseq2=1

[Fri Apr  1 12:45:31 2022]
Finished job 38.
1 of 67 steps (1%) done

[Fri Apr  1 12:45:31 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_intermediate.epidermis_early.epidermis.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_intermediate.epidermis_early.epidermis.txt
    jobid: 50
    wildcards: contrast=celltype_intermediate.epidermis_early.epidermis
    resources: deseq2=1

[Fri Apr  1 12:46:03 2022]
Finished job 50.
2 of 67 steps (3%) done

[Fri Apr  1 12:46:03 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_early.epidermis_neoblasts.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_early.epidermis_neoblasts.txt
    jobid: 48
    wildcards: contrast=celltype_early.epidermis_neoblasts
    resources: deseq2=1

[Fri Apr  1 12:46:42 2022]
Finished job 48.
3 of 67 steps (4%) done

[Fri Apr  1 12:46:42 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_secretory_neoblasts.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_secretory_neoblasts.txt
    jobid: 31
    wildcards: contrast=celltype_secretory_neoblasts
    resources: deseq2=1

[Fri Apr  1 12:47:25 2022]
Finished job 31.
4 of 67 steps (6%) done

[Fri Apr  1 12:47:25 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_muscle.pharynx_neoblasts.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_muscle.pharynx_neoblasts.txt
    jobid: 37
    wildcards: contrast=celltype_muscle.pharynx_neoblasts
    resources: deseq2=1

[Fri Apr  1 12:48:02 2022]
Finished job 37.
5 of 67 steps (7%) done

[Fri Apr  1 12:48:02 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_muscle.body_neoblasts.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_muscle.body_neoblasts.txt
    jobid: 35
    wildcards: contrast=celltype_muscle.body_neoblasts
    resources: deseq2=1

[Fri Apr  1 12:48:38 2022]
Finished job 35.
6 of 67 steps (9%) done

[Fri Apr  1 12:48:38 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_goblet_neoblasts.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_goblet_neoblasts.txt
    jobid: 42
    wildcards: contrast=celltype_goblet_neoblasts
    resources: deseq2=1

[Fri Apr  1 12:49:12 2022]
Finished job 42.
7 of 67 steps (10%) done

[Fri Apr  1 12:49:12 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_epidermis_intermediate.epidermis.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_epidermis_intermediate.epidermis.txt
    jobid: 52
    wildcards: contrast=celltype_epidermis_intermediate.epidermis
    resources: deseq2=1

[Fri Apr  1 12:49:44 2022]
Finished job 52.
8 of 67 steps (12%) done

[Fri Apr  1 12:49:44 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_phagocytes_neoblasts.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_phagocytes_neoblasts.txt
    jobid: 33
    wildcards: contrast=celltype_phagocytes_neoblasts
    resources: deseq2=1

[Fri Apr  1 12:50:18 2022]
Finished job 33.
9 of 67 steps (13%) done

[Fri Apr  1 12:50:18 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_protonephridia_neoblasts.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_protonephridia_neoblasts.txt
    jobid: 46
    wildcards: contrast=celltype_protonephridia_neoblasts
    resources: deseq2=1

[Fri Apr  1 12:50:54 2022]
Finished job 46.
10 of 67 steps (15%) done

[Fri Apr  1 12:50:54 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_pharynx_neoblasts.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_pharynx_neoblasts.txt
    jobid: 44
    wildcards: contrast=celltype_pharynx_neoblasts
    resources: deseq2=1

[Fri Apr  1 12:51:27 2022]
Finished job 44.
11 of 67 steps (16%) done

[Fri Apr  1 12:51:27 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_parenchymal_neoblasts.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_parenchymal_neoblasts.txt
    jobid: 29
    wildcards: contrast=celltype_parenchymal_neoblasts
    resources: deseq2=1

[Fri Apr  1 12:52:05 2022]
Finished job 29.
12 of 67 steps (18%) done

[Fri Apr  1 12:52:05 2022]
rule deseq2:
    input: /bank/experiments/2022-04-jordi/ananse/rna_samples.tsv, /bank/experiments/2022-04-jordi/ananse/counts_per_replicate_cluster.tsv
    output: /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_neurons_neoblasts.diffexp.tsv
    log: /bank/experiments/2022-04-jordi/ananse/deseq2/log_celltype_neurons_neoblasts.txt
    jobid: 40
    wildcards: contrast=celltype_neurons_neoblasts
    resources: deseq2=1

[Fri Apr  1 12:52:45 2022]
Finished job 40.
13 of 67 steps (19%) done

[Fri Apr  1 12:52:45 2022]
rule pfmscorefile:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv
    log: /bank/experiments/2022-04-jordi/ananse/gimme/log_Smed_pfmscorefile.txt
    jobid: 67
    threads: 12

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/2739dbdf
[Fri Apr  1 12:53:38 2022]
Finished job 67.
14 of 67 steps (21%) done

[Fri Apr  1 12:53:38 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/phagocytes.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_phagocytes.txt
    jobid: 56
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_phagocytes.txt
    wildcards: condition=phagocytes
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 12:54:50 2022]
Finished job 56.
15 of 67 steps (22%) done

[Fri Apr  1 12:54:50 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/phagocytes.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/phagocytes.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_phagocytes.txt
    jobid: 32
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_phagocytes.txt
    wildcards: condition=phagocytes
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 12:57:58 2022]
Finished job 32.
16 of 67 steps (24%) done

[Fri Apr  1 12:57:58 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/goblet.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_goblet.txt
    jobid: 60
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_goblet.txt
    wildcards: condition=goblet
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 12:59:10 2022]
Finished job 60.
17 of 67 steps (25%) done

[Fri Apr  1 12:59:10 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/goblet.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/goblet.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_goblet.txt
    jobid: 41
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_goblet.txt
    wildcards: condition=goblet
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:02:12 2022]
Finished job 41.
18 of 67 steps (27%) done

[Fri Apr  1 13:02:12 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/muscle.pharynx.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_muscle.pharynx.txt
    jobid: 58
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_muscle.pharynx.txt
    wildcards: condition=muscle.pharynx
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:03:25 2022]
Finished job 58.
19 of 67 steps (28%) done

[Fri Apr  1 13:03:25 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/muscle.pharynx.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/muscle.pharynx.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_muscle.pharynx.txt
    jobid: 36
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_muscle.pharynx.txt
    wildcards: condition=muscle.pharynx
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:06:29 2022]
Finished job 36.
20 of 67 steps (30%) done

[Fri Apr  1 13:06:29 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/neurons.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_neurons.txt
    jobid: 59
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_neurons.txt
    wildcards: condition=neurons
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:07:41 2022]
Finished job 59.
21 of 67 steps (31%) done

[Fri Apr  1 13:07:41 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/neurons.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/neurons.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_neurons.txt
    jobid: 39
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_neurons.txt
    wildcards: condition=neurons
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:10:47 2022]
Finished job 39.
22 of 67 steps (33%) done

[Fri Apr  1 13:10:47 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/protonephridia.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_protonephridia.txt
    jobid: 62
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_protonephridia.txt
    wildcards: condition=protonephridia
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:11:59 2022]
Finished job 62.
23 of 67 steps (34%) done

[Fri Apr  1 13:11:59 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/protonephridia.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/protonephridia.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_protonephridia.txt
    jobid: 45
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_protonephridia.txt
    wildcards: condition=protonephridia
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:15:03 2022]
Finished job 45.
24 of 67 steps (36%) done

[Fri Apr  1 13:15:03 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/secretory.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_secretory.txt
    jobid: 55
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_secretory.txt
    wildcards: condition=secretory
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:16:16 2022]
Finished job 55.
25 of 67 steps (37%) done

[Fri Apr  1 13:16:16 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/secretory.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/secretory.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_secretory.txt
    jobid: 30
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_secretory.txt
    wildcards: condition=secretory
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:19:22 2022]
Finished job 30.
26 of 67 steps (39%) done

[Fri Apr  1 13:19:22 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/pharynx.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_pharynx.txt
    jobid: 61
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_pharynx.txt
    wildcards: condition=pharynx
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:20:32 2022]
Finished job 61.
27 of 67 steps (40%) done

[Fri Apr  1 13:20:32 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/pharynx.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/pharynx.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_pharynx.txt
    jobid: 43
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_pharynx.txt
    wildcards: condition=pharynx
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:23:34 2022]
Finished job 43.
28 of 67 steps (42%) done

[Fri Apr  1 13:23:34 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/intermediate.epidermis.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_intermediate.epidermis.txt
    jobid: 64
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_intermediate.epidermis.txt
    wildcards: condition=intermediate.epidermis
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:24:43 2022]
Finished job 64.
29 of 67 steps (43%) done

[Fri Apr  1 13:24:43 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/intermediate.epidermis.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/intermediate.epidermis.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_intermediate.epidermis.txt
    jobid: 49
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_intermediate.epidermis.txt
    wildcards: condition=intermediate.epidermis
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:27:53 2022]
Finished job 49.
30 of 67 steps (45%) done

[Fri Apr  1 13:27:53 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/epidermis.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_epidermis.txt
    jobid: 65
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_epidermis.txt
    wildcards: condition=epidermis
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:29:03 2022]
Finished job 65.
31 of 67 steps (46%) done

[Fri Apr  1 13:29:03 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/epidermis.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/epidermis.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_epidermis.txt
    jobid: 51
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_epidermis.txt
    wildcards: condition=epidermis
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:32:03 2022]
Finished job 51.
32 of 67 steps (48%) done

[Fri Apr  1 13:32:03 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/intermediate.epidermis.tsv, /bank/experiments/2022-04-jordi/ananse/network/epidermis.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_epidermis_intermediate.epidermis.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_epidermis_intermediate.epidermis.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_epidermis_intermediate.epidermis_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_epidermis_intermediate.epidermis.txt
    jobid: 26
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_epidermis_intermediate.epidermis.txt
    wildcards: contrast=celltype_epidermis_intermediate.epidermis
    resources: mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:35:03 2022]
Finished job 26.
33 of 67 steps (49%) done

[Fri Apr  1 13:35:03 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_epidermis_intermediate.epidermis.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_epidermis_intermediate.epidermis_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_epidermis_intermediate.epidermis.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_epidermis_intermediate.epidermis.txt
    jobid: 13
    wildcards: contrast=celltype_epidermis_intermediate.epidermis


[Fri Apr  1 13:35:03 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/early.epidermis.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_early.epidermis.txt
    jobid: 63
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_early.epidermis.txt
    wildcards: condition=early.epidermis
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:35:19 2022]
Finished job 13.
34 of 67 steps (51%) done
[Fri Apr  1 13:36:16 2022]
Finished job 63.
35 of 67 steps (52%) done

[Fri Apr  1 13:36:16 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/early.epidermis.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/early.epidermis.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_early.epidermis.txt
    jobid: 47
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_early.epidermis.txt
    wildcards: condition=early.epidermis
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:39:21 2022]
Finished job 47.
36 of 67 steps (54%) done

[Fri Apr  1 13:39:21 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/early.epidermis.tsv, /bank/experiments/2022-04-jordi/ananse/network/intermediate.epidermis.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_intermediate.epidermis_early.epidermis.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_intermediate.epidermis_early.epidermis.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_intermediate.epidermis_early.epidermis_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_intermediate.epidermis_early.epidermis.txt
    jobid: 25
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_intermediate.epidermis_early.epidermis.txt
    wildcards: contrast=celltype_intermediate.epidermis_early.epidermis
    resources: mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:42:37 2022]
Finished job 25.
37 of 67 steps (55%) done

[Fri Apr  1 13:42:37 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/neoblasts.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_neoblasts.txt
    jobid: 53
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_neoblasts.txt
    wildcards: condition=neoblasts
    resources: mem_mb=40000


[Fri Apr  1 13:42:37 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_intermediate.epidermis_early.epidermis.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_intermediate.epidermis_early.epidermis_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_intermediate.epidermis_early.epidermis.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_intermediate.epidermis_early.epidermis.txt
    jobid: 12
    wildcards: contrast=celltype_intermediate.epidermis_early.epidermis

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:42:49 2022]
Finished job 12.
38 of 67 steps (57%) done
[Fri Apr  1 13:43:52 2022]
Finished job 53.
39 of 67 steps (58%) done

[Fri Apr  1 13:43:52 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/neoblasts.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/neoblasts.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_neoblasts.txt
    jobid: 27
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_neoblasts.txt
    wildcards: condition=neoblasts
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:46:55 2022]
Finished job 27.
40 of 67 steps (60%) done

[Fri Apr  1 13:46:55 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/network/neurons.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_neurons_neoblasts.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_neurons_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_neurons_neoblasts_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_neurons_neoblasts.txt
    jobid: 20
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_neurons_neoblasts.txt
    wildcards: contrast=celltype_neurons_neoblasts
    resources: mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:50:01 2022]
Finished job 20.
41 of 67 steps (61%) done

[Fri Apr  1 13:50:01 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_neurons_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_neurons_neoblasts_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_neurons_neoblasts.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_neurons_neoblasts.txt
    jobid: 7
    wildcards: contrast=celltype_neurons_neoblasts


[Fri Apr  1 13:50:01 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/network/phagocytes.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_phagocytes_neoblasts.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_phagocytes_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_phagocytes_neoblasts_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_phagocytes_neoblasts.txt
    jobid: 16
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_phagocytes_neoblasts.txt
    wildcards: contrast=celltype_phagocytes_neoblasts
    resources: mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:50:18 2022]
Finished job 7.
42 of 67 steps (63%) done
[Fri Apr  1 13:53:10 2022]
Finished job 16.
43 of 67 steps (64%) done

[Fri Apr  1 13:53:10 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_phagocytes_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_phagocytes_neoblasts_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_phagocytes_neoblasts.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_phagocytes_neoblasts.txt
    jobid: 3
    wildcards: contrast=celltype_phagocytes_neoblasts


[Fri Apr  1 13:53:10 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/network/secretory.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_secretory_neoblasts.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_secretory_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_secretory_neoblasts_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_secretory_neoblasts.txt
    jobid: 15
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_secretory_neoblasts.txt
    wildcards: contrast=celltype_secretory_neoblasts
    resources: mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:53:26 2022]
Finished job 3.
44 of 67 steps (66%) done
[Fri Apr  1 13:56:19 2022]
Finished job 15.
45 of 67 steps (67%) done

[Fri Apr  1 13:56:19 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/network/muscle.pharynx.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_muscle.pharynx_neoblasts.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.pharynx_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.pharynx_neoblasts_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_muscle.pharynx_neoblasts.txt
    jobid: 18
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_muscle.pharynx_neoblasts.txt
    wildcards: contrast=celltype_muscle.pharynx_neoblasts
    resources: mem_mb=24000


[Fri Apr  1 13:56:19 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_secretory_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_secretory_neoblasts_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_secretory_neoblasts.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_secretory_neoblasts.txt
    jobid: 2
    wildcards: contrast=celltype_secretory_neoblasts

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 13:56:37 2022]
Finished job 2.
46 of 67 steps (69%) done
[Fri Apr  1 13:59:59 2022]
Finished job 18.
47 of 67 steps (70%) done

[Fri Apr  1 13:59:59 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.pharynx_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.pharynx_neoblasts_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_muscle.pharynx_neoblasts.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_muscle.pharynx_neoblasts.txt
    jobid: 5
    wildcards: contrast=celltype_muscle.pharynx_neoblasts


[Fri Apr  1 13:59:59 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/network/early.epidermis.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_early.epidermis_neoblasts.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_early.epidermis_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_early.epidermis_neoblasts_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_early.epidermis_neoblasts.txt
    jobid: 24
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_early.epidermis_neoblasts.txt
    wildcards: contrast=celltype_early.epidermis_neoblasts
    resources: mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:00:16 2022]
Finished job 5.
48 of 67 steps (72%) done
[Fri Apr  1 14:02:59 2022]
Finished job 24.
49 of 67 steps (73%) done

[Fri Apr  1 14:02:59 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/network/pharynx.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_pharynx_neoblasts.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_pharynx_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_pharynx_neoblasts_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_pharynx_neoblasts.txt
    jobid: 22
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_pharynx_neoblasts.txt
    wildcards: contrast=celltype_pharynx_neoblasts
    resources: mem_mb=24000


[Fri Apr  1 14:02:59 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_early.epidermis_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_early.epidermis_neoblasts_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_early.epidermis_neoblasts.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_early.epidermis_neoblasts.txt
    jobid: 11
    wildcards: contrast=celltype_early.epidermis_neoblasts

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:03:10 2022]
Finished job 11.
50 of 67 steps (75%) done
[Fri Apr  1 14:05:53 2022]
Finished job 22.
51 of 67 steps (76%) done

[Fri Apr  1 14:05:53 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_pharynx_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_pharynx_neoblasts_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_pharynx_neoblasts.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_pharynx_neoblasts.txt
    jobid: 9
    wildcards: contrast=celltype_pharynx_neoblasts


[Fri Apr  1 14:05:53 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/network/protonephridia.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_protonephridia_neoblasts.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_protonephridia_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_protonephridia_neoblasts_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_protonephridia_neoblasts.txt
    jobid: 23
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_protonephridia_neoblasts.txt
    wildcards: contrast=celltype_protonephridia_neoblasts
    resources: mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:06:09 2022]
Finished job 9.
52 of 67 steps (78%) done
[Fri Apr  1 14:09:14 2022]
Finished job 23.
53 of 67 steps (79%) done

[Fri Apr  1 14:09:14 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_protonephridia_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_protonephridia_neoblasts_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_protonephridia_neoblasts.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_protonephridia_neoblasts.txt
    jobid: 10
    wildcards: contrast=celltype_protonephridia_neoblasts


[Fri Apr  1 14:09:14 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/network/goblet.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_goblet_neoblasts.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_goblet_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_goblet_neoblasts_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_goblet_neoblasts.txt
    jobid: 21
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_goblet_neoblasts.txt
    wildcards: contrast=celltype_goblet_neoblasts
    resources: mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:09:24 2022]
Finished job 10.
54 of 67 steps (81%) done
[Fri Apr  1 14:12:18 2022]
Finished job 21.
55 of 67 steps (82%) done

[Fri Apr  1 14:12:18 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_goblet_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_goblet_neoblasts_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_goblet_neoblasts.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_goblet_neoblasts.txt
    jobid: 8
    wildcards: contrast=celltype_goblet_neoblasts


[Fri Apr  1 14:12:18 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/parenchymal.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_parenchymal.txt
    jobid: 54
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_parenchymal.txt
    wildcards: condition=parenchymal
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:12:32 2022]
Finished job 8.
56 of 67 steps (84%) done
[Fri Apr  1 14:13:33 2022]
Finished job 54.
57 of 67 steps (85%) done

[Fri Apr  1 14:13:33 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/parenchymal.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/parenchymal.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_parenchymal.txt
    jobid: 28
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_parenchymal.txt
    wildcards: condition=parenchymal
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:16:39 2022]
Finished job 28.
58 of 67 steps (87%) done

[Fri Apr  1 14:16:39 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/network/parenchymal.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_parenchymal_neoblasts.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_parenchymal_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_parenchymal_neoblasts_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_parenchymal_neoblasts.txt
    jobid: 14
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_parenchymal_neoblasts.txt
    wildcards: contrast=celltype_parenchymal_neoblasts
    resources: mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:19:33 2022]
Finished job 14.
59 of 67 steps (88%) done

[Fri Apr  1 14:19:33 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_parenchymal_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_parenchymal_neoblasts_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_parenchymal_neoblasts.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_parenchymal_neoblasts.txt
    jobid: 1
    wildcards: contrast=celltype_parenchymal_neoblasts


[Fri Apr  1 14:19:33 2022]
rule binding:
    input: /bank/experiments/2022-04-jordi/ananse/atac_counts_min4.tsv, /bank/experiments/2022-04-jordi/ananse/gimme/Smed.JASPAR2022_vertebrates.pfm, /bank/experiments/2022-04-jordi/ananse/gimme/pfmscorefile.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/binding/muscle.body.h5
    log: /bank/experiments/2022-04-jordi/ananse/binding/log_muscle.body.txt
    jobid: 57
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/binding_muscle.body.txt
    wildcards: condition=muscle.body
    resources: mem_mb=40000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:19:43 2022]
Finished job 1.
60 of 67 steps (90%) done
[Fri Apr  1 14:20:45 2022]
Finished job 57.
61 of 67 steps (91%) done

[Fri Apr  1 14:20:45 2022]
rule network:
    input: /bank/experiments/2022-04-jordi/ananse/binding/muscle.body.h5, /bank/experiments/2022-04-jordi/ananse/tpms_per_replicate_cluster.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/network/muscle.body.tsv
    log: /bank/experiments/2022-04-jordi/ananse/network/log_muscle.body.txt
    jobid: 34
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/network_muscle.body.txt
    wildcards: condition=muscle.body
    resources: network=1, mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:23:50 2022]
Finished job 34.
62 of 67 steps (93%) done

[Fri Apr  1 14:23:50 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/network/muscle.body.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_muscle.body_neoblasts.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.body_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.body_neoblasts_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_muscle.body_neoblasts.txt
    jobid: 17
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_muscle.body_neoblasts.txt
    wildcards: contrast=celltype_muscle.body_neoblasts
    resources: mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:28:16 2022]
Finished job 17.
63 of 67 steps (94%) done

[Fri Apr  1 14:28:16 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.body_neoblasts.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.body_neoblasts_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_muscle.body_neoblasts.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_muscle.body_neoblasts.txt
    jobid: 4
    wildcards: contrast=celltype_muscle.body_neoblasts


[Fri Apr  1 14:28:16 2022]
rule influence:
    input: /bank/experiments/2022-04-jordi/ananse/network/muscle.pharynx.tsv, /bank/experiments/2022-04-jordi/ananse/network/muscle.body.tsv, /bank/experiments/2022-04-jordi/ananse/deseq2/Smed-celltype_muscle.body_muscle.pharynx.diffexp.tsv, /bank/genomes/Smed
    output: /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.body_muscle.pharynx.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.body_muscle.pharynx_diffnetwork.tsv
    log: /bank/experiments/2022-04-jordi/ananse/influence/log_celltype_muscle.body_muscle.pharynx.txt
    jobid: 19
    benchmark: /bank/experiments/2022-04-jordi/ananse/benchmarks/influence_celltype_muscle.body_muscle.pharynx.txt
    wildcards: contrast=celltype_muscle.body_muscle.pharynx
    resources: mem_mb=24000

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:28:27 2022]
Finished job 4.
64 of 67 steps (96%) done
[Fri Apr  1 14:31:08 2022]
Finished job 19.
65 of 67 steps (97%) done

[Fri Apr  1 14:31:08 2022]
rule plot:
    input: /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.body_muscle.pharynx.tsv, /bank/experiments/2022-04-jordi/ananse/influence/celltype_muscle.body_muscle.pharynx_diffnetwork.tsv
    output: /bank/experiments/2022-04-jordi/ananse/plot/celltype_muscle.body_muscle.pharynx.png
    log: /bank/experiments/2022-04-jordi/ananse/plot/log_celltype_muscle.body_muscle.pharynx.txt
    jobid: 6
    wildcards: contrast=celltype_muscle.body_muscle.pharynx

Activating conda environment: /home/siebrenf/git/anansnake/.snakemake/conda/47b5693a
[Fri Apr  1 14:31:20 2022]
Finished job 6.
66 of 67 steps (99%) done

[Fri Apr  1 14:31:20 2022]
localrule all:
    input: /bank/experiments/2022-04-jordi/ananse/plot/celltype_parenchymal_neoblasts.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_secretory_neoblasts.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_phagocytes_neoblasts.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_muscle.body_neoblasts.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_muscle.pharynx_neoblasts.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_muscle.body_muscle.pharynx.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_neurons_neoblasts.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_goblet_neoblasts.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_pharynx_neoblasts.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_protonephridia_neoblasts.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_early.epidermis_neoblasts.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_intermediate.epidermis_early.epidermis.png, /bank/experiments/2022-04-jordi/ananse/plot/celltype_epidermis_intermediate.epidermis.png
    jobid: 0

[Fri Apr  1 14:31:20 2022]
Finished job 0.
67 of 67 steps (100%) done
Complete log: /home/siebrenf/git/anansnake/.snakemake/log/2022-04-01T124500.669032.snakemake.log