#!/bin/bash
# Chipseq bigWigs moeten in de chipWig directory staan

function addTrack {
	NAME=$(basename $1 .bw)
	echo "  track $NAME " >> chipseq_trackDb.txt
	echo "  parent Chipseq " >> chipseq_trackDb.txt
	echo "  shortLabel $NAME " >> chipseq_trackDb.txt
	echo "  longLabel $NAME " >> chipseq_trackDb.txt
	echo "  type bigWig " >> chipseq_trackDb.txt
   	echo "  color 0,177,92" >> chipseq_trackDb.txt
	echo "  visibility full" >> chipseq_trackDb.txt
	echo "  bigDataUrl $1 " >> chipseq_trackDb.txt
	echo "  maxHeightPixels 30:30:11 " >> chipseq_trackDb.txt
	echo "  autoScale off" >> chipseq_trackDb.txt
	echo -e "\n" >> chipseq_trackDb.txt

}

function addSuperTrack {
	echo "track Chipseq" > chipseq_trackDb.txt
	echo "shortLabel Chipseq" >> chipseq_trackDb.txt
	echo "longLabel Inhouse Chipseq data" >> chipseq_trackDb.txt
	echo "superTrack on show" >> chipseq_trackDb.txt
	echo "priority 1" >> chipseq_trackDb.txt
	echo -e "\n" >> chipseq_trackDb.txt
}

addSuperTrack

for file in chipWig/*
do
addTrack $file
done