#!/bin/bash
# RNAseq bigWigs moeten in de chipWig directory staan

function addTrack {
	NAME=$(basename $1 .bw)
	echo "  track $NAME" >> rnaseq_trackDb.txt
	echo "  parent RNAseq" >> rnaseq_trackDb.txt
	echo "  shortLabel $NAME" >> rnaseq_trackDb.txt
	echo "  longLabel $NAME" >> rnaseq_trackDb.txt
	echo "  type bigWig" >> rnaseq_trackDb.txt
   	echo "  color 255,51,0" >> rnaseq_trackDb.txt
	echo "  visibility full" >> rnaseq_trackDb.txt
	echo "  bigDataUrl $1 " >> rnaseq_trackDb.txt
	echo "  autoScale on" >> rnaseq_trackDb.txt
	echo -e "\n" >> rnaseq_trackDb.txt

}

function addSuperTrack {
	echo "track RNAseq" > rnaseq_trackDb.txt
        echo "shortLabel RNAseq" >> rnaseq_trackDb.txt
        echo "longLabel Inhouse RNAseq data" >> rnaseq_trackDb.txt
        echo "superTrack on show" >> rnaseq_trackDb.txt
        echo "priority 1" >> rnaseq_trackDb.txt
        echo -e "\n" >> rnaseq_trackDb.txt
	
}

addSuperTrack

for file in rnaWig/*
	do
		addTrack $file
	done