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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.15

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-10-11, 09:11 CEST based on data in: /scratch/tmp/Marijke P. A. Baltissen

        General Statistics

        Showing 12/12 rows and 5/7 columns.
        Sample Name% DuplicationM Reads After FilteringGC content% PF% Adapter
        46300_Exp228_IVD_RNA_1_EV_RPE_SCC23_07_Z07
        90.5%
        6.0
        52.4%
        99.6%
        1.5%
        46301_Exp228_IVD_RNA_2_EV_RPE_SCC23_08_Z01
        97.2%
        9.9
        52.1%
        99.7%
        0.6%
        46302_Exp228_IVD_RNA_3_EV_RPE_SCC23_09_Z08
        95.5%
        8.3
        51.7%
        99.7%
        1.7%
        46303_Exp228_IVD_RNA_4_EV_RPE_IPS15_01_Z02
        91.7%
        9.9
        52.5%
        99.5%
        1.1%
        46304_Exp228_IVD_RNA_5_EV_RPE_SCC23_13_Z03
        94.2%
        10.1
        51.5%
        99.6%
        1.3%
        46305_Exp228_IVD_RNA_6_EV_RPE_SCC23_14_Z04
        97.5%
        8.0
        51.5%
        99.7%
        0.4%
        46306_Exp228_IVD_RNA_7_EV_RPE_SCC23_30_Z05
        98.0%
        10.3
        51.4%
        99.7%
        0.3%
        46307_Exp228_IVD_RNA_8_EV_RPE_SCC23_31_Z09
        89.7%
        7.6
        51.3%
        99.6%
        0.6%
        46308_Exp228_IVD_RNA_9_PEG_EV_2023_100_Z10
        94.2%
        9.3
        51.6%
        99.3%
        6.1%
        46309_Exp228_IVD_RNA_10_PEG_EV_2023_110_Z11
        96.1%
        14.3
        51.0%
        99.3%
        9.6%
        46310_Exp228_IVD_RNA_11_PEG_EV_2023_14p_Z12
        94.7%
        13.1
        52.8%
        99.5%
        17.2%
        46311_Exp228_IVD_RNA_12_PEG_EV_2023_15p_Z06
        92.4%
        12.9
        51.2%
        99.7%
        13.3%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).DOI: 10.1093/bioinformatics/bty560.

        Filtered Reads

        Filtering statistics of sampled reads.

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        Insert Sizes

        Insert size estimation of sampled reads.

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        Sequence Quality

        Average sequencing quality over each base of all reads.

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        GC Content

        Average GC content over each base of all reads.

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        N content

        Average N content over each base of all reads.

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        MultiQC v1.15 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.