FastQCFastQC Report
Thu 6 Jul 2023
D6_R1_VP6_S7_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameD6_R1_VP6_S7_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1784112
Total Bases105.2 Mbp
Sequences flagged as poor quality0
Sequence length59
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCAGGCAGGCTT88279349.480806137731264No Hit
ACCTGCCAGTAGGGAAGGTGGGAAGAAATGAGTTCCCTGTACAATGTAAA165350.9267915915592744No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCAGGCAGGCGT103220.5785511223510632No Hit
ACCTGCCAGTAGGGAAGGATCACAGGTGAGTCAAACAGGAAGCCTGCTCC100960.5658837561767422No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCACTCCAGGCAGGCTT60000.3363017568403777No Hit
ACCTGCCAGTAGGGAAGGATCATGAGGAGACCAGGAGGACATTCCACAGT51580.2891074102971114No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCAGGCCGGCGT47220.2646694826333773No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCACCAGGCAGGCTT40600.22756418879532228No Hit
ACCTGCCAGTAGAGAAGGATCCCTGTTATAACCCCTCTCCAGGCAGGCTT37600.21074910095330335No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCAGGCGGGCTT35140.19696072892284788No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCAGGCCGGCTT30570.17134574511017245No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCCCTCCAGGCAGGCTT28800.1614248432833813No Hit
ACCTGCCAGTAGGGAAGGATCAGCCCGTGAGCCCCAGGGGAGGGGGAAAT28220.158173926300591No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCCCCAGGCAGGCTT26280.14730016949608546No Hit
ACCTGCCAGTAGGGAAGGATCCCTGCTATAACCCCTCTCCAGGCAGGCTT25970.1455626104190768No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCGGGCAGGCTT24860.13934102791752984No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCAGGCAGGCTA24470.13715506649806739No Hit
ACCTGCCAGTAGGGAAGGATCCCCGTTATAACCCCTCTCCAGGCAGGCTT23360.1309334839965204No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTTTAACCCCTCTCCAGGCAGGCTT22850.12807491906337717No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCACGCAGGCTT22820.127906768184957No Hit
ACCTGCCAGTAGGGAGGGATCCCTGTTATAACCCCTCTCCAGGCAGGCTT22370.12538450500865417No Hit
ACCTGCCAGTAGGGAAGGATCCAGATTCCTGGGAATCCTATAAGCCCTCC22040.12353484534603208No Hit
ACCTGCCAGTAGGGAAGGACCCCTGTTATAACCCCTCTCCAGGCAGGCTT21830.12235778919709077No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAGCCCCTCTCCAGGCAGGCTT21700.12162913539060327No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCAGGCAGGCCT21390.11989157631359466No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCAGGCTGGCTT21200.11882662075026679No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCAGGCAGGCTC21090.11821006752939277No Hit
ACCTGCCAGTAGGGAAGGATCGCTGTTATAACCCCTCTCCAGGCAGGCTT20010.11215663590626597No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTGTAACCCCTCTCCAGGCAGGCTT19260.10795286394576124No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATAACCCCTCTCCACGCCGGCGT18590.10419749432771037No Hit
ACCTGCCAGTAGGGAAGGATCCCTGTTATTACCCCTCTCCAGGCAGGCTT17970.10072237617369313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)