name: GRCh38.p14
provider: NCBI
original name: GRCh38.p14
original filename: GCF_000001405.40_GRCh38.p14_genomic.fna.gz
assembly_accession: GCF_000001405.40
tax_id: 9606
mask: soft
genome url: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/GCF_000001405.40_GRCh38.p14_genomic.fna.gz
annotation url: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/GCF_000001405.40_GRCh38.p14_genomic.gff.gz
sanitized annotation: 244 contigs were renamed. 204 contigs were removed (see below).
genomepy version: 0.13.0
date: 2022-09-26 12:08:37
regex: 'alt' (inverted match)

The following contigs were filtered out of the genome:
HSCHR1_1_CTG3, HSCHR1_2_CTG3, HSCHR1_1_CTG11, HSCHR1_4_CTG31, HSCHR1_1_CTG31, HSCHR1_2_CTG31, HSCHR1_3_CTG31, HSCHR1_4_CTG32_1, HSCHR1_3_CTG32_1, HSCHR1_1_CTG32_1, HSCHR1_2_CTG32_1, HSCHR2_2_CTG1, HSCHR2_3_CTG1, HSCHR2_4_CTG1, HSCHR2_1_CTG1, HSCHR2_1_CTG5, HSCHR2_1_CTG7, HSCHR2_5_CTG7_2, HSCHR2_4_CTG7_2, HSCHR2_3_CTG7_2, HSCHR2_2_CTG7_2, HSCHR2_1_CTG7_2, HSCHR2_3_CTG15, HSCHR2_1_CTG15, HSCHR3_1_CTG1, HSCHR3_3_CTG1, HSCHR3_4_CTG2_1, HSCHR3_1_CTG2_1, HSCHR3_2_CTG2_1, HSCHR3_3_CTG2_1, HSCHR3_5_CTG2_1, HSCHR3_1_CTG3, HSCHR3_2_CTG3, HSCHR3_9_CTG3, HSCHR4_1_CTG4, HSCHR4_1_CTG6, HSCHR4_1_CTG8_1, HSCHR4_1_CTG9, HSCHR4_4_CTG12, HSCHR4_1_CTG12, HSCHR4_2_CTG12, HSCHR4_5_CTG12, HSCHR4_3_CTG12, HSCHR5_5_CTG1, HSCHR5_4_CTG1, HSCHR5_3_CTG1, HSCHR5_1_CTG1, HSCHR5_2_CTG1, HSCHR5_6_CTG1, HSCHR5_2_CTG1_1, HSCHR5_3_CTG1_1, HSCHR5_4_CTG1_1, HSCHR5_1_CTG5, HSCHR5_2_CTG5, HSCHR6_MHC_APD_CTG1, HSCHR6_1_CTG7, HSCHR6_1_CTG6, HSCHR6_1_CTG2, HSCHR6_1_CTG8, HSCHR6_1_CTG9, HSCHR6_1_CTG3, HSCHR6_1_CTG4, HSCHR6_1_CTG5, HSCHR7_1_CTG1, HSCHR7_2_CTG4_4, HSCHR7_1_CTG4_4, HSCHR7_1_CTG6, HSCHR7_2_CTG6, HSCHR7_3_CTG6, HSCHR7_2_CTG7, HSCHR7_1_CTG7, HSCHR8_4_CTG1, HSCHR8_2_CTG1, HSCHR8_1_CTG1, HSCHR8_8_CTG1, HSCHR8_3_CTG1, HSCHR8_9_CTG1, HSCHR8_1_CTG6, HSCHR8_1_CTG7, HSCHR8_5_CTG7, HSCHR8_6_CTG7, HSCHR8_4_CTG7, HSCHR8_3_CTG7, HSCHR8_2_CTG7, HSCHR9_1_CTG1, HSCHR9_1_CTG2, HSCHR9_1_CTG3, HSCHR9_1_CTG4, HSCHR9_1_CTG5, HSCHR10_1_CTG1, HSCHR10_1_CTG3, HSCHR10_1_CTG2, HSCHR11_1_CTG8, HSCHR11_1_CTG6, HSCHR11_1_CTG7, HSCHR11_1_CTG5, HSCHR11_1_CTG1_1, HG142_HG150_NOVEL_TEST, HG151_NOVEL_TEST, HSCHR11_1_CTG3, HSCHR11_1_CTG2, HSCHR12_1_CTG1, HSCHR12_2_CTG2, HSCHR12_5_CTG2, HSCHR12_1_CTG2, HSCHR12_4_CTG2, HSCHR12_1_CTG2_1, HSCHR12_2_CTG2_1, HSCHR12_3_CTG2_1, HSCHR12_6_CTG2_1, HSCHR12_4_CTG2_1, HSCHR12_5_CTG2_1, HSCHR12_7_CTG2_1, HSCHR13_1_CTG3, HSCHR13_1_CTG2, HSCHR13_1_CTG6, HSCHR13_1_CTG4, HSCHR13_1_CTG1, HSCHR13_1_CTG5, HSCHR14_1_CTG1, HSCHR14_7_CTG1, HSCHR14_2_CTG1, HSCHR14_3_CTG1, HSCHR15_1_CTG1, HSCHR15_3_CTG3, HSCHR15_1_CTG3, HSCHR15_1_CTG8, HSCHR15_3_CTG8, HSCHR15_2_CTG8, HSCHR15_5_CTG8, HSCHR16_CTG2, HSCHR16_4_CTG1, HSCHR16_3_CTG1, HSCHR16_1_CTG1, HSCHR16_1_CTG3_1, HSCHR16_2_CTG3_1, HSCHR17_1_CTG1, HSCHR17_2_CTG2, HSCHR17_1_CTG2, HSCHR17_7_CTG4, HSCHR17_4_CTG4, HSCHR17_5_CTG4, HSCHR17_1_CTG4, HSCHR17_1_CTG5, HSCHR17_2_CTG4, HSCHR17_8_CTG4, HSCHR17_9_CTG4, HSCHR17_3_CTG4, HSCHR17_1_CTG9, HSCHR18_4_CTG1_1, HSCHR18_1_CTG1_1, HSCHR18_2_CTG1_1, HSCHR18_2_CTG2, HSCHR18_1_CTG2, HSCHR18_1_CTG2_1, HSCHR18_2_CTG2_1, HSCHR18_3_CTG2_1, HSCHR19_5_CTG2, HSCHR19_4_CTG2, HSCHR19_1_CTG2, HSCHR19_2_CTG2, HSCHR19_3_CTG2, HSCHR19_1_CTG3_1, HSCHR19_2_CTG3_1, HSCHR19_3_CTG3_1, HSCHR19LRC_COX1_CTG3_1, HSCHR20_1_CTG1, HSCHR20_1_CTG2, HSCHR20_1_CTG4, HSCHR20_1_CTG3, HSCHR21_1_CTG1_1, HSCHR21_8_CTG1_1, HSCHR21_6_CTG1_1, HSCHR21_2_CTG1_1, HSCHR21_3_CTG1_1, HSCHR21_4_CTG1_1, HSCHR21_5_CTG2, HSCHR22_1_CTG3, HSCHR22_1_CTG6, HSCHR22_1_CTG7, HSCHR22_1_CTG4, HSCHR22_1_CTG5, HSCHR22_1_CTG2, HSCHR22_1_CTG1, HSCHRX_1_CTG3, HSCHRX_2_CTG12, HSCHR1_ALT2_1_CTG32_1, HSCHR2_2_CTG7, HSCHR2_2_CTG15, HSCHR3_3_CTG3, HSCHR4_6_CTG12, HSCHR5_1_CTG1_1, HSCHR5_3_CTG5, HSCHR6_MHC_COX_CTG1, HSCHR7_2_CTG1, HSCHR8_6_CTG1, HSCHR8_5_CTG1, HSCHR11_2_CTG1, HSCHR11_2_CTG1_1, HSCHR12_3_CTG2, HSCHR15_2_CTG3, HSCHR15_4_CTG8, HSCHR17_2_CTG1, HSCHR17_3_CTG2, HSCHR17_10_CTG4, HSCHR17_6_CTG4, HSCHR17_2_CTG5, HSCHR18_ALT21_CTG2_1, HSCHR18_ALT2_CTG2_1, HSCHR19LRC_COX2_CTG3_1, HSCHR22_2_CTG1, HSCHRX_2_CTG3, HSCHR3_4_CTG3, HSCHR4_7_CTG12, HSCHR6_MHC_DBB_CTG1, HSCHR8_7_CTG1, HSCHR11_3_CTG1, HSCHR19LRC_LRC_I_CTG3_1, HSCHR22_3_CTG1, HSCHR3_5_CTG3, HSCHR6_MHC_MANN_CTG1, HSCHR19LRC_LRC_J_CTG3_1, HSCHR3_6_CTG3, HSCHR6_MHC_MCF_CTG1, HSCHR19LRC_LRC_S_CTG3_1, HSCHR3_7_CTG3, HSCHR6_MHC_QBL_CTG1, HSCHR19LRC_LRC_T_CTG3_1, HSCHR3_8_CTG3, HSCHR6_MHC_SSTO_CTG1, HSCHR19LRC_PGF1_CTG3_1, HSCHR6_8_CTG1, HSCHR19LRC_PGF2_CTG3_1, HSCHR19_4_CTG3_1, HSCHR19KIR_FH15_B_HAP_CTG3_1, HSCHR19KIR_G085_A_HAP_CTG3_1, HSCHR19KIR_G085_BA1_HAP_CTG3_1, HSCHR19KIR_G248_A_HAP_CTG3_1, HSCHR19KIR_G248_BA2_HAP_CTG3_1, HSCHR19KIR_GRC212_AB_HAP_CTG3_1, HSCHR19KIR_GRC212_BA1_HAP_CTG3_1, HSCHR19KIR_LUCE_A_HAP_CTG3_1, HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1, HSCHR19KIR_RSH_A_HAP_CTG3_1, HSCHR19KIR_RSH_BA2_HAP_CTG3_1, HSCHR19KIR_T7526_A_HAP_CTG3_1, HSCHR19KIR_T7526_BDEL_HAP_CTG3_1, HSCHR19KIR_ABC08_A1_HAP_CTG3_1, HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1, HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1, HSCHR19KIR_FH05_A_HAP_CTG3_1, HSCHR19KIR_FH05_B_HAP_CTG3_1, HSCHR19KIR_FH06_A_HAP_CTG3_1, HSCHR19KIR_FH06_BA1_HAP_CTG3_1, HSCHR19KIR_FH08_A_HAP_CTG3_1, HSCHR19KIR_FH08_BAX_HAP_CTG3_1, HSCHR19KIR_FH13_A_HAP_CTG3_1, HSCHR19KIR_FH13_BA2_HAP_CTG3_1, HSCHR19KIR_FH15_A_HAP_CTG3_1, HSCHR19KIR_RP5_B_HAP_CTG3_1

The following contigs were filtered out of the gene annotation:
NW_003315965.1, NW_003315906.1, NT_187605.1, NT_187610.1, NT_187558.1, NT_187614.1, NT_187657.1, NT_187570.1, NT_113891.3, NT_187643.1, NT_187604.1, NW_003315913.1, NW_003315956.1, NT_187555.1, NT_187586.1, NT_187690.1, NT_187644.1, NT_187515.1, NW_003315945.1, NW_003571049.1, NT_187540.1, NT_187572.1, NT_113949.2, NT_187611.1, NW_003315935.1, NT_187621.1, NT_187654.1, NT_187519.1, NW_003315964.2, NW_003315934.1, NT_187546.1, NT_187573.1, NT_187533.1, NT_187559.1, NW_003315952.3, NT_167245.2, NT_187599.1, NT_187684.1, NT_187624.1, NT_187592.1, NW_003315909.1, NT_187651.1, NT_187678.1, NT_187584.1, NT_187663.1, NT_187687.1, NT_187613.1, NT_187683.1, NT_187668.1, NT_187666.1, NT_167247.2, NT_187686.1, NT_187637.1, NW_003315970.2, NT_187569.1, NW_003571058.2, NT_187658.1, NT_187640.1, NT_187672.1, NT_167248.2, NT_167249.2, NT_187650.1, NT_187634.1, NT_187551.1, NW_003315943.1, NT_187565.1, NW_003315942.2, NT_187590.1, NW_003571033.2, NT_187625.1, NT_187680.1, NW_003871092.1, NW_003315971.2, NT_187602.1, NT_187564.1, NT_187639.1, NT_187561.1, NT_187693.1, NT_187645.1, NT_187641.1, NT_187562.1, NT_187576.1, NT_187648.1, NT_187585.1, NT_187529.1, NT_187527.1, NW_003315929.1, NT_187638.1, NW_003315917.2, NT_167251.2, NT_187574.1, NW_003871074.1, NT_187603.1, NT_187626.1, NT_187526.1, NT_187622.1, NT_187601.1, NT_187617.1, NT_187522.1, NT_167244.2, NT_187674.1, NT_187600.1, NT_187518.1, NT_187682.1, NW_003315953.2, NT_187636.1, NT_187619.1, NT_187550.1, NT_187691.1, NT_187676.1, NT_187552.1, NW_003315963.1, NW_003315914.1, NT_187652.1, NW_003571056.2, NT_187629.1, NT_187671.1, NT_187589.1, NT_187675.1, NT_187577.1, NT_187516.1, NW_003315930.1, NW_003315960.1, NT_187594.1, NT_187583.1, NT_187609.1, NT_187646.1, NT_187593.1, NT_187596.1, NT_187534.1, NT_187548.1, NT_187673.1, NT_187623.1, NT_187606.1, NT_187608.1, NW_003315922.2, NT_187568.1, NT_187689.1, NT_187578.1, NW_003571055.2, NT_187659.1, NT_187612.1, NT_187670.1, NW_003315907.2, NW_003315908.1, NT_187630.1, NT_187660.1, NW_003871093.1, NW_003871091.1, NW_003315946.1, NW_003871060.2, NT_187632.1, NT_187692.1, NT_187575.1, NT_187662.1, NW_003571060.1, NW_003315955.1, NT_187520.1, NW_003571050.1, NT_187553.1, NW_003315944.2, NT_187517.1, NT_187571.1, NT_187539.1, NT_187664.1, NT_187524.1, NW_003315961.1, NT_187635.1, NT_187656.1, NT_187653.1, NW_003571061.2, NW_004504305.1, NW_003315905.1, NT_187627.1, NT_187588.1, NT_187598.1, NT_187620.1, NW_003571057.2, NW_003315962.1, NT_187669.1, NT_187633.1, NT_187677.1, NW_003315972.2, NT_187681.1, NW_003315969.2, NT_187649.1, NW_003315939.2, NT_187537.1, NT_187556.1, NW_003871073.1, NW_003571059.2, NT_187547.1, NT_187642.1, NT_187532.1, NT_187688.1, NT_187631.1, NT_187607.1, NT_167250.2, NT_187661.1, NT_187667.1, NW_003571054.1, NT_187685.1, NT_187587.1, NT_167246.2