{ "summary": { "before_filtering": { "total_reads":203603704, "total_bases":3257659264, "q20_bases":3145671027, "q30_bases":3110729899, "q20_rate":0.965623, "q30_rate":0.954897, "read1_mean_length":16, "gc_content":0.549477 }, "after_filtering": { "total_reads":177694537, "total_bases":2843112592, "q20_bases":2789542452, "q30_bases":2769211103, "q20_rate":0.981158, "q30_rate":0.974007, "read1_mean_length":16, "gc_content":0.493808 } }, "filtering_result": { "passed_filter_reads": 177694537, "low_quality_reads": 3984353, "too_many_N_reads": 8913, "too_short_reads": 21915901, "too_long_reads": 0 }, "duplication": { "rate": 0, "histogram": [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], "mean_gc": [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0] }, "read1_before_filtering": { "total_reads": 203603704, "total_bases": 3257659264, "q20_bases": 3145671027, "q30_bases": 3110729899, "total_cycles": 16, "quality_curves": { "A":[30.8998,31.0852,31.3672,31.3719,31.3984,35.0714,35.0494,34.9823,34.7978,34.8276,34.7303,34.702,34.6666,34.6757,34.6473,34.5632], "T":[31.4576,31.4874,31.5484,31.5538,31.5572,35.3645,35.3699,35.363,35.344,35.2977,35.2989,35.2561,35.2592,35.2511,35.2306,35.186], "C":[31.4519,31.4575,31.5002,31.4861,31.4927,35.2031,35.1939,35.1619,35.1459,35.1453,35.1743,35.1807,35.1498,35.1393,35.1479,35.0639], "G":[31.1542,31.0739,31.2612,31.2772,31.2575,34.8711,34.8207,34.7491,34.6006,34.5686,34.666,34.5999,34.6027,34.6044,34.5381,34.5102], "mean":[31.2127,31.2412,31.3957,31.3948,31.3938,35.0816,35.0505,35.0035,34.9152,34.8865,34.852,34.8268,34.8051,34.7847,34.7528,34.694] }, "content_curves": { "A":[0.25293,0.257094,0.266508,0.270683,0.265263,0.264099,0.265387,0.24676,0.243503,0.252332,0.279067,0.246585,0.252275,0.258246,0.267095,0.262634], "T":[0.280084,0.260039,0.24444,0.228386,0.221297,0.219004,0.20908,0.225428,0.210065,0.195097,0.128218,0.130275,0.135135,0.12468,0.121395,0.120242], "C":[0.131328,0.150152,0.158089,0.151435,0.155601,0.169575,0.168203,0.166565,0.223611,0.211946,0.200512,0.229843,0.207523,0.183806,0.197967,0.19475], "G":[0.335614,0.332692,0.330906,0.3494,0.357701,0.347116,0.357072,0.360933,0.322468,0.340259,0.391742,0.392768,0.404577,0.432743,0.41295,0.421785], "N":[4.28823e-05,2.27992e-05,5.77838e-05,9.68646e-05,0.00013766,0.000206519,0.000257937,0.000313305,0.00035327,0.000365843,0.000459888,0.000528286,0.00049059,0.000525216,0.000592082,0.000589179], "GC":[0.466942,0.482844,0.488995,0.500834,0.513302,0.516691,0.525275,0.527498,0.546079,0.552205,0.592255,0.622612,0.6121,0.616549,0.610917,0.616535] }, "kmer_count": { "AAAAA":61560442, "AAAAT":10184911, "AAAAC":4721918, "AAAAG":7139292, "AAATA":3348930, "AAATT":6204232, "AAATC":2490625, "AAATG":3062053, "AAACA":3159276, "AAACT":1820050, "AAACC":2182894, "AAACG":2651862, "AAAGA":3866046, "AAAGT":2784674, "AAAGC":3552488, "AAAGG":4864024, "AATAA":2372081, "AATAT":2012492, "AATAC":1869115, 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"GGAAT":1470497, "GGAAC":1915395, "GGAAG":3965768, "GGATA":1776495, "GGATT":1134356, "GGATC":1107603, "GGATG":2317147, "GGACA":2162527, "GGACT":1220467, "GGACC":1456685, "GGACG":2529532, "GGAGA":3753517, "GGAGT":1880738, "GGAGC":3005041, "GGAGG":5199304, "GGTAA":2277855, "GGTAT":1371773, "GGTAC":1968543, "GGTAG":2754258, "GGTTA":2133817, "GGTTT":1519913, "GGTTC":2832742, "GGTTG":2291118, "GGTCA":1427440, "GGTCT":1528058, "GGTCC":1122994, "GGTCG":1566525, "GGTGA":2745998, "GGTGT":1870161, "GGTGC":1999646, "GGTGG":3904655, "GGCAA":4700349, "GGCAT":1830678, "GGCAC":2230173, "GGCAG":4651657, "GGCTA":2463433, "GGCTT":1413597, "GGCTC":1313957, "GGCTG":2448650, "GGCCA":3319540, "GGCCT":1797815, "GGCCC":2656335, "GGCCG":4318719, "GGCGA":4621343, "GGCGT":2082098, "GGCGC":2847603, "GGCGG":6242649, "GGGAA":4924760, "GGGAT":2866344, "GGGAC":3017003, "GGGAG":6013620, "GGGTA":2985076, "GGGTT":3856698, "GGGTC":1919152, "GGGTG":4361760, "GGGCA":3856789, "GGGCT":2217479, "GGGCC":3080805, "GGGCG":6240153, "GGGGA":8843026, "GGGGT":7902642, "GGGGC":9429850, "GGGGG":295168910 }, "overrepresented_sequences": { } }, "read1_after_filtering": { "total_reads": 177694537, "total_bases": 2843112592, "q20_bases": 2789542452, "q30_bases": 2769211103, "total_cycles": 16, "quality_curves": { "A":[31.139,31.2367,31.5262,31.5378,31.5821,35.3267,35.3204,35.2855,35.1341,35.1741,35.0691,35.0906,35.0638,35.0749,35.0479,34.9692], "T":[31.5224,31.5718,31.6472,31.6667,31.6789,35.5233,35.5347,35.5242,35.519,35.4868,35.5409,35.4989,35.4967,35.5015,35.4825,35.4551], "C":[31.6054,31.6136,31.6664,31.6845,31.7086,35.4913,35.4989,35.4899,35.4214,35.4366,35.4617,35.4515,35.439,35.4497,35.4431,35.3858], "G":[31.3495,31.464,31.5777,31.6269,31.6461,35.4406,35.4363,35.4257,35.3736,35.3625,35.4061,35.3889,35.399,35.405,35.4,35.3505], "mean":[31.3816,31.455,31.5972,31.6197,31.6459,35.4367,35.4365,35.4232,35.3537,35.3532,35.33,35.3347,35.3254,35.3284,35.3097,35.2545] }, "content_curves": { "A":[0.283108,0.289994,0.300511,0.305085,0.29862,0.296848,0.298064,0.276545,0.272315,0.281932,0.31188,0.274527,0.280555,0.287069,0.296767,0.291501], "T":[0.317879,0.2949,0.276981,0.258647,0.250511,0.247898,0.236676,0.255191,0.237689,0.220541,0.14449,0.146778,0.152284,0.140385,0.136693,0.135167], "C":[0.14775,0.169218,0.178154,0.170279,0.174697,0.190238,0.188644,0.186626,0.25138,0.238036,0.225172,0.258378,0.232971,0.206058,0.222177,0.218172], "G":[0.251229,0.245884,0.244353,0.265986,0.276167,0.26501,0.276604,0.281613,0.238576,0.259453,0.31837,0.32018,0.334079,0.366352,0.344164,0.354957], "N":[3.51108e-05,4.63154e-06,1.39003e-06,3.64671e-06,5.78521e-06,6.92762e-06,1.11652e-05,2.5043e-05,3.83861e-05,3.73506e-05,8.85114e-05,0.000138046,0.000111742,0.000136526,0.000198982,0.000202071], "GC":[0.398979,0.415101,0.422507,0.436265,0.450864,0.455247,0.465249,0.468239,0.489957,0.497489,0.543542,0.578557,0.56705,0.57241,0.56634,0.57313] }, "kmer_count": { "AAAAA":59403463, "AAAAT":9963059, "AAAAC":4455871, "AAAAG":6896623, "AAATA":3171999, "AAATT":6108075, "AAATC":2451754, "AAATG":3004537, "AAACA":2966573, "AAACT":1782487, "AAACC":2037796, "AAACG":2581871, "AAAGA":3707396, "AAAGT":2726442, "AAAGC":3474523, "AAAGG":4735260, "AATAA":2202083, "AATAT":1959184, "AATAC":1811515, "AATAG":2089394, "AATTA":6625391, "AATTT":2315033, "AATTC":1830147, "AATTG":2481385, "AATCA":1756206, "AATCT":1293144, "AATCC":992603, "AATCG":2757422, "AATGA":1836544, "AATGT":1502656, "AATGC":1974579, "AATGG":2360529, "AACAA":2158996, "AACAT":1877861, "AACAC":1525825, "AACAG":2442362, "AACTA":1589279, "AACTT":1008637, "AACTC":929454, "AACTG":1406677, "AACCA":1647117, "AACCT":805154, "AACCC":4935414, "AACCG":1922521, "AACGA":2123758, "AACGT":1329274, "AACGC":1534763, "AACGG":2210666, "AAGAA":3008253, "AAGAT":1659788, "AAGAC":2012743, "AAGAG":3674927, "AAGTA":1603002, "AAGTT":1850093, "AAGTC":1539001, "AAGTG":2239959, "AAGCA":2494064, "AAGCT":1954339, "AAGCC":1751438, "AAGCG":2502799, "AAGGA":3375137, "AAGGT":2106489, "AAGGC":2617143, "AAGGG":4649068, "ATAAA":2593871, "ATAAT":1927004, "ATAAC":1406608, "ATAAG":1758457, "ATATA":1945884, "ATATT":3482435, "ATATC":1325213, "ATATG":1239758, "ATACA":1681214, "ATACT":978569, "ATACC":3424232, "ATACG":1435486, "ATAGA":1672953, "ATAGT":6582461, "ATAGC":1850572, "ATAGG":2067800, "ATTAA":2350568, "ATTAT":2710431, "ATTAC":18237934, "ATTAG":2325370, "ATTTA":2832412, "ATTTT":2597710, "ATTTC":1546756, "ATTTG":1731332, "ATTCA":1818990, "ATTCT":1650965, "ATTCC":1229801, "ATTCG":1297419, "ATTGA":1682209, "ATTGT":1787216, "ATTGC":1614752, "ATTGG":1567870, "ATCAA":1472598, "ATCAT":1825431, "ATCAC":1019615, "ATCAG":1489314, "ATCTA":1680970, "ATCTT":1400241, "ATCTC":1012106, "ATCTG":1090711, "ATCCA":1173893, "ATCCT":973945, "ATCCC":514685, "ATCCG":988249, "ATCGA":2292228, "ATCGT":1572383, "ATCGC":1110683, "ATCGG":1179350, "ATGAA":1759313, "ATGAT":1623811, "ATGAC":1376257, "ATGAG":2079414, "ATGTA":1954263, "ATGTT":1853044, "ATGTC":1394687, "ATGTG":1933929, "ATGCA":2162803, "ATGCT":1315786, "ATGCC":1244458, "ATGCG":1439497, "ATGGA":1663205, "ATGGT":1564991, "ATGGC":1587416, "ATGGG":2596149, "ACAAA":2825215, "ACAAT":1358836, "ACAAC":1570908, "ACAAG":2334463, "ACATA":1629205, "ACATT":1971999, "ACATC":917137, "ACATG":2467006, "ACACA":1434660, "ACACT":941928, "ACACC":1104609, "ACACG":1679469, "ACAGA":2268065, "ACAGT":1477741, "ACAGC":1903580, "ACAGG":2578354, "ACTAA":1260049, "ACTAT":1253782, "ACTAC":1826945, "ACTAG":1401969, "ACTTA":1654724, "ACTTT":1082456, "ACTTC":721400, "ACTTG":1066360, "ACTCA":1030552, "ACTCT":792014, "ACTCC":487605, "ACTCG":948315, "ACTGA":1347867, "ACTGT":1178741, "ACTGC":1218042, "ACTGG":1460743, "ACCAA":2072223, "ACCAT":1155698, "ACCAC":1284283, "ACCAG":2532619, "ACCTA":1070378, "ACCTT":743683, "ACCTC":637622, "ACCTG":1080658, "ACCCA":1296414, "ACCCT":594042, "ACCCC":4629147, "ACCCG":1420861, "ACCGA":3583473, "ACCGT":1754014, "ACCGC":2391239, "ACCGG":25986389, "ACGAA":2333744, "ACGAT":1176804, "ACGAC":1416542, "ACGAG":2425790, "ACGTA":1625985, "ACGTT":1068532, "ACGTC":1056025, "ACGTG":2083960, "ACGCA":1693213, "ACGCT":1116936, "ACGCC":1058205, "ACGCG":2140066, "ACGGA":2065729, "ACGGT":1332742, "ACGGC":2169637, "ACGGG":3176601, "AGAAA":3326813, "AGAAT":1422701, "AGAAC":1911697, "AGAAG":3366083, "AGATA":1850672, "AGATT":1788806, "AGATC":1026136, "AGATG":1907540, "AGACA":2164747, "AGACT":1302004, "AGACC":1375367, "AGACG":2608139, "AGAGA":3370474, "AGAGT":1530350, "AGAGC":2206983, "AGAGG":4217208, "AGTAA":1553842, "AGTAT":993000, "AGTAC":1658599, "AGTAG":1804168, "AGTTA":1898286, "AGTTT":1337661, "AGTTC":1285690, "AGTTG":1963164, "AGTCA":1414110, "AGTCT":1303331, "AGTCC":1189499, "AGTCG":4043339, "AGTGA":7431387, "AGTGT":1362140, "AGTGC":1464071, "AGTGG":2345634, "AGCAA":2545862, "AGCAT":1107298, "AGCAC":1554795, "AGCAG":2916081, "AGCTA":2306290, "AGCTT":1433708, "AGCTC":965355, "AGCTG":1719408, "AGCCA":1697692, "AGCCT":1074640, "AGCCC":964213, "AGCCG":1705345, "AGCGA":2475322, "AGCGT":1314221, "AGCGC":1558815, "AGCGG":2814312, "AGGAA":2915842, "AGGAT":1446750, "AGGAC":2033297, "AGGAG":3653476, "AGGTA":1908314, "AGGTT":1631731, "AGGTC":1241936, "AGGTG":2159863, "AGGCA":2435842, "AGGCT":1469650, "AGGCC":1672174, "AGGCG":2648539, "AGGGA":3772129, "AGGGT":1967677, "AGGGC":2594899, "AGGGG":8035757, "TAAAA":7049712, "TAAAT":1685667, "TAAAC":1424669, "TAAAG":2039719, "TAATA":1657659, "TAATT":3162714, "TAATC":1282035, "TAATG":1361952, "TAACA":1539565, "TAACT":1053164, "TAACC":1226444, "TAACG":1275297, "TAAGA":1769410, "TAAGT":1558002, "TAAGC":1652283, "TAAGG":2122406, "TATAA":1613138, "TATAT":2399558, "TATAC":2291069, "TATAG":6377338, "TATTA":8955737, "TATTT":2313727, "TATTC":1584828, "TATTG":1404888, "TATCA":1365962, "TATCT":1520076, "TATCC":1070812, "TATCG":1443416, "TATGA":1440592, "TATGT":1523716, "TATGC":1292203, "TATGG":1408973, "TACAA":2191010, "TACAT":1985866, "TACAC":1522676, "TACAG":2523846, "TACTA":1553675, "TACTT":1292186, "TACTC":844062, "TACTG":1431036, "TACCA":2934343, "TACCT":1329460, "TACCC":1670193, "TACCG":27444005, "TACGA":2109512, "TACGT":1693284, "TACGC":2058605, "TACGG":2807969, "TAGAA":2085998, "TAGAT":1485993, "TAGAC":1710433, "TAGAG":2297560, "TAGTA":1445127, "TAGTT":1583812, "TAGTC":1815201, "TAGTG":6787209, "TAGCA":1962340, "TAGCT":2098022, "TAGCC":1429604, "TAGCG":1742820, "TAGGA":2020760, "TAGGT":1444186, "TAGGC":1721976, "TAGGG":3162705, "TTAAA":2774404, "TTAAT":2274118, "TTAAC":1435657, "TTAAG":1867022, "TTATA":2545196, "TTATT":4788600, "TTATC":1528540, "TTATG":1757254, "TTACA":2838505, "TTACT":1723584, "TTACC":21428119, "TTACG":3706671, "TTAGA":1700053, "TTAGT":1827854, "TTAGC":1712810, "TTAGG":2059314, "TTTAA":2047774, "TTTAT":3374766, "TTTAC":4023466, "TTTAG":1760216, "TTTTA":3279105, "TTTTT":3492826, "TTTTC":2177386, "TTTTG":2194822, "TTTCA":2137775, "TTTCT":2172199, "TTTCC":1228754, "TTTCG":1404838, "TTTGA":1882385, "TTTGT":2428282, "TTTGC":1731043, "TTTGG":1567944, "TTCAA":1719065, "TTCAT":2140061, "TTCAC":1913882, "TTCAG":3083832, "TTCTA":2452981, "TTCTT":1827125, "TTCTC":1462091, "TTCTG":1701343, "TTCCA":1212631, "TTCCT":1223757, "TTCCC":796214, "TTCCG":1225241, "TTCGA":1396014, "TTCGT":1733214, "TTCGC":1323446, "TTCGG":1133606, "TTGAA":1769179, "TTGAT":1789710, "TTGAC":1343494, "TTGAG":1926215, "TTGTA":2181270, "TTGTT":2426193, "TTGTC":2048508, "TTGTG":1814303, "TTGCA":3068963, "TTGCT":1735153, "TTGCC":1084476, "TTGCG":1472408, "TTGGA":1365093, "TTGGT":1621049, "TTGGC":1279970, "TTGGG":2184141, "TCAAA":2216658, "TCAAT":1421107, "TCAAC":1176405, "TCAAG":1454544, "TCATA":1573013, "TCATT":2688492, "TCATC":941336, "TCATG":1800267, "TCACA":1312622, "TCACT":961624, "TCACC":997307, "TCACG":1584232, "TCAGA":2508166, "TCAGT":1618609, "TCAGC":1461872, "TCAGG":1647704, "TCTAA":1243423, "TCTAT":1618110, "TCTAC":2576308, "TCTAG":2022385, "TCTTA":1877113, "TCTTT":1467399, "TCTTC":1050601, "TCTTG":1275163, "TCTCA":1315039, "TCTCT":1153261, "TCTCC":563614, "TCTCG":1538112, "TCTGA":3920543, "TCTGT":1167667, "TCTGC":1152047, "TCTGG":1216016, "TCCAA":1468635, "TCCAT":998098, "TCCAC":954166, "TCCAG":1321214, "TCCTA":1428309, "TCCTT":1094593, "TCCTC":535209, "TCCTG":874555, "TCCCA":658393, "TCCCT":558997, "TCCCC":502175, "TCCCG":685648, "TCCGA":1024473, "TCCGT":952535, "TCCGC":745006, "TCCGG":1223102, "TCGAA":1696801, "TCGAT":1087262, "TCGAC":1519316, "TCGAG":1555344, "TCGTA":3080513, "TCGTT":1059353, "TCGTC":1953907, "TCGTG":1272607, "TCGCA":1112006, "TCGCT":1037062, "TCGCC":940590, "TCGCG":1375560, "TCGGA":1117310, "TCGGT":849156, "TCGGC":984702, "TCGGG":1903423, "TGAAA":3350086, "TGAAT":1283553, "TGAAC":2327095, "TGAAG":2820611, "TGATA":1551772, "TGATT":2459691, "TGATC":989877, "TGATG":1702784, "TGACA":1920929, "TGACT":1159009, "TGACC":1030962, "TGACG":1449111, "TGAGA":2297655, "TGAGT":3654884, "TGAGC":1459797, "TGAGG":2728779, "TGTAA":1651474, "TGTAT":1736164, "TGTAC":2879229, "TGTAG":1673334, "TGTTA":2653825, "TGTTT":1965015, "TGTTC":1597096, "TGTTG":1690653, "TGTCA":1537470, "TGTCT":1815896, "TGTCC":1361856, "TGTCG":1381668, "TGTGA":1743223, "TGTGT":1666088, "TGTGC":1840657, "TGTGG":1970976, "TGCAA":3527249, "TGCAT":1520237, "TGCAC":1212577, "TGCAG":1933017, "TGCTA":2150803, "TGCTT":1334305, "TGCTC":996736, "TGCTG":1420921, "TGCCA":1406462, "TGCCT":1051428, "TGCCC":703841, "TGCCG":1272072, "TGCGA":1666344, "TGCGT":1477259, "TGCGC":1176352, "TGCGG":1867627, "TGGAA":1763018, "TGGAT":1094465, "TGGAC":1314553, "TGGAG":2160310, "TGGTA":1754054, "TGGTT":1789625, "TGGTC":1319238, "TGGTG":1889648, "TGGCA":1762625, "TGGCT":1367150, "TGGCC":1182389, "TGGCG":1812943, "TGGGA":2102131, "TGGGT":1608344, "TGGGC":1655621, "TGGGG":6042497, "CAAAA":5851349, "CAAAT":1295253, "CAAAC":1987737, "CAAAG":2647870, "CAATA":1341146, "CAATT":1802014, "CAATC":2082369, "CAATG":1245815, "CAACA":1772141, "CAACT":1105624, "CAACC":1578176, "CAACG":1827424, "CAAGA":2322642, "CAAGT":1278335, "CAAGC":1782140, "CAAGG":2764382, "CATAA":1558998, "CATAT":1055551, "CATAC":1446638, "CATAG":1749332, "CATTA":4288598, "CATTT":1302256, "CATTC":899224, "CATTG":1002005, "CATCA":1116899, "CATCT":1031635, "CATCC":676842, "CATCG":870503, "CATGA":1931489, "CATGT":2046270, "CATGC":1387283, "CATGG":1645297, "CACAA":1589049, "CACAT":1065656, "CACAC":1133105, "CACAG":1572106, "CACTA":931238, "CACTT":627485, "CACTC":637280, "CACTG":1062336, "CACCA":1194002, "CACCT":639643, "CACCC":779747, "CACCG":1377389, "CACGA":1414228, "CACGT":1468910, "CACGC":1071731, "CACGG":1738195, "CAGAA":2387792, "CAGAT":1572967, "CAGAC":2497741, "CAGAG":2738672, "CAGTA":1414781, "CAGTT":1317777, "CAGTC":1708186, "CAGTG":1810759, "CAGCA":1887369, "CAGCT":1529683, "CAGCC":1371084, "CAGCG":1922573, "CAGGA":2388083, "CAGGT":1377674, "CAGGC":1911769, "CAGGG":3592456, "CTAAA":1857958, "CTAAT":1144581, "CTAAC":1005199, "CTAAG":1467379, "CTATA":5660133, "CTATT":1824407, "CTATC":797609, "CTATG":869207, "CTACA":1382299, "CTACT":840528, "CTACC":4470591, "CTACG":1354326, "CTAGA":2251359, "CTAGT":1244892, "CTAGC":1865525, "CTAGG":1736156, "CTTAA":1041855, "CTTAT":1154447, "CTTAC":3014398, "CTTAG":1057112, "CTTTA":1497934, "CTTTT":1405959, "CTTTC":1001394, "CTTTG":1276805, "CTTCA":1243770, "CTTCT":1026072, "CTTCC":721255, "CTTCG":1310052, "CTTGA":1142975, "CTTGT":1258934, "CTTGC":1234500, "CTTGG":1067921, "CTCAA":1036994, "CTCAT":1068783, "CTCAC":935047, "CTCAG":1090239, "CTCTA":1130019, "CTCTT":770240, "CTCTC":717205, "CTCTG":1025294, "CTCCA":629142, "CTCCT":470288, "CTCCC":415995, "CTCCG":614466, "CTCGA":953685, "CTCGT":1170201, "CTCGC":847660, "CTCGG":984003, "CTGAA":3773738, "CTGAT":1125119, "CTGAC":1158337, "CTGAG":1770529, "CTGTA":1398167, "CTGTT":1037600, "CTGTC":989213, "CTGTG":1106143, "CTGCA":1233090, "CTGCT":1210169, "CTGCC":910724, "CTGCG":1127293, "CTGGA":1280492, "CTGGT":1156894, "CTGGC":1173439, "CTGGG":2170165, "CCAAA":2381121, "CCAAT":877368, "CCAAC":1317584, "CCAAG":1829913, "CCATA":901954, "CCATT":1097403, "CCATC":700064, "CCATG":1093301, "CCACA":1236964, "CCACT":620719, "CCACC":972079, "CCACG":1198921, "CCAGA":2119071, "CCAGT":1238790, "CCAGC":1578884, "CCAGG":2124223, "CCTAA":900362, "CCTAT":4728661, "CCTAC":1259225, "CCTAG":1161845, "CCTTA":724549, "CCTTT":634221, "CCTTC":1129425, "CCTTG":672816, "CCTCA":693045, "CCTCT":551229, "CCTCC":427703, "CCTCG":652659, "CCTGA":956288, "CCTGT":735382, "CCTGC":827995, "CCTGG":1141590, "CCCAA":1145144, "CCCAT":601052, "CCCAC":664295, "CCCAG":1275640, "CCCTA":4449685, "CCCTT":353751, "CCCTC":453850, "CCCTG":602733, "CCCCA":734912, "CCCCT":4204078, "CCCCC":599088, "CCCCG":827410, "CCCGA":1157356, "CCCGT":556808, "CCCGC":836710, "CCCGG":1496697, "CCGAA":2402052, "CCGAT":1154431, "CCGAC":1292795, "CCGAG":2613114, "CCGTA":1402979, "CCGTT":648534, "CCGTC":1111542, "CCGTG":1170932, "CCGCA":1503090, "CCGCT":837182, "CCGCC":1149649, "CCGCG":1621714, "CCGGA":3398693, "CCGGT":1538285, "CCGGC":20760617, "CCGGG":4751805, "CGAAA":3115339, "CGAAT":1480394, "CGAAC":1708243, "CGAAG":2772004, "CGATA":1542608, "CGATT":1353076, "CGATC":949707, "CGATG":1327861, "CGACA":1662945, "CGACT":1016235, "CGACC":1134783, "CGACG":1788311, "CGAGA":2817138, "CGAGT":1340033, "CGAGC":1681756, "CGAGG":3337009, "CGTAA":1575700, "CGTAT":2663971, "CGTAC":1649607, "CGTAG":1652232, "CGTTA":1190251, "CGTTT":741695, "CGTTC":881911, "CGTTG":1057024, "CGTCA":902133, "CGTCT":1779345, "CGTCC":898809, "CGTCG":1514264, "CGTGA":1461211, "CGTGT":1014209, "CGTGC":1317098, "CGTGG":1935348, "CGCAA":2020251, "CGCAT":887489, "CGCAC":1012307, "CGCAG":1943616, "CGCTA":1305085, "CGCTT":824985, "CGCTC":686387, "CGCTG":1212989, "CGCCA":1233408, "CGCCT":673020, "CGCCC":815940, "CGCCG":1373194, "CGCGA":2006121, "CGCGT":1379193, "CGCGC":1276226, "CGCGG":2243844, "CGGAA":2672535, "CGGAT":1134406, "CGGAC":1549317, "CGGAG":3179098, "CGGTA":1402191, "CGGTT":1089417, "CGGTC":1042662, "CGGTG":1888590, "CGGCA":6357978, "CGGCT":3003338, "CGGCC":7584506, "CGGCG":5790186, "CGGGA":3190361, "CGGGT":1639221, "CGGGC":2323092, "CGGGG":7661749, "GAAAA":5841086, "GAAAT":1502731, "GAAAC":1883582, "GAAAG":3919231, "GAATA":1426617, "GAATT":1002535, "GAATC":942535, "GAATG":2015721, "GAACA":2033362, "GAACT":1090573, "GAACC":5252304, "GAACG":2257686, "GAAGA":3502781, "GAAGT":1566441, "GAAGC":2513668, "GAAGG":4236075, "GATAA":1623610, "GATAT":1550781, "GATAC":1479997, "GATAG":1905871, "GATTA":3137675, "GATTT":1379964, "GATTC":1065628, "GATTG":1270761, "GATCA":1136094, "GATCT":767713, "GATCC":852951, "GATCG":1138752, "GATGA":1749762, "GATGT":1579465, "GATGC":1429711, "GATGG":2277750, "GACAA":2308363, "GACAT":1626555, "GACAC":1240100, "GACAG":2158858, "GACTA":1354516, "GACTT":1056952, "GACTC":796904, "GACTG":1274465, "GACCA":1335589, "GACCT":743523, "GACCC":856403, "GACCG":1483121, "GACGA":2083724, "GACGT":1403338, "GACGC":1601405, "GACGG":2474668, "GAGAA":3344005, "GAGAT":1602895, "GAGAC":1961166, "GAGAG":4006285, "GAGTA":1504034, "GAGTT":1159800, "GAGTC":2973080, "GAGTG":2148561, "GAGCA":2152280, "GAGCT":1188168, "GAGCC":1404932, "GAGCG":2619311, "GAGGA":3498818, "GAGGT":2035405, "GAGGC":2684965, "GAGGG":5890181, "GTAAA":2938142, "GTAAT":1286090, "GTAAC":1267729, "GTAAG":1836234, "GTATA":1478994, "GTATT":2477349, "GTATC":1372109, "GTATG":1225780, "GTACA":1834619, "GTACT":1134592, "GTACC":3027129, "GTACG":1920851, "GTAGA":1849923, "GTAGT":1595557, "GTAGC":1762003, "GTAGG":2500933, "GTTAA":1498224, "GTTAT":1558315, "GTTAC":3677944, "GTTAG":1541028, "GTTTA":1758409, "GTTTT":1590842, "GTTTC":1281346, "GTTTG":1462538, "GTTCA":2810067, "GTTCT":1641985, "GTTCC":952801, "GTTCG":1183617, "GTTGA":1410804, "GTTGT":1848406, "GTTGC":2342059, "GTTGG":1728699, "GTCAA":1466102, "GTCAT":1155744, "GTCAC":1101587, "GTCAG":1677481, "GTCTA":1485950, "GTCTT":820285, "GTCTC":1004230, "GTCTG":3367367, "GTCCA":1523406, "GTCCT":993110, "GTCCC":688789, "GTCCG":1150438, "GTCGA":2413737, "GTCGT":2744813, "GTCGC":1213543, "GTCGG":1642856, "GTGAA":2283613, "GTGAT":1490783, "GTGAC":1575258, "GTGAG":7817957, "GTGTA":1635728, "GTGTT":1430198, "GTGTC":1397093, "GTGTG":1733913, "GTGCA":1978481, "GTGCT":1223726, "GTGCC":1145501, "GTGCG":2007733, "GTGGA":2170504, "GTGGT":1862173, "GTGGC":1988854, "GTGGG":4016993, "GCAAA":3811365, "GCAAT":2613400, "GCAAC":2609892, "GCAAG":3253389, "GCATA":1465140, "GCATT":1145177, "GCATC":996009, "GCATG":1714325, "GCACA":1807125, "GCACT":910657, "GCACC":1138682, "GCACG":1756645, "GCAGA":2979789, "GCAGT":1893390, "GCAGC":2321787, "GCAGG":3599053, "GCTAA":1984545, "GCTAT":1316968, "GCTAC":2131988, "GCTAG":2632087, "GCTTA":1429282, "GCTTT":1259208, "GCTTC":1122817, "GCTTG":1383517, "GCTCA":1067723, "GCTCT":930866, "GCTCC":684330, "GCTCG":1145965, "GCTGA":1724647, "GCTGT":1355541, "GCTGC":1353882, "GCTGG":2087245, "GCCAA":2069263, "GCCAT":1078487, "GCCAC":1508211, "GCCAG":2432494, "GCCTA":1359613, "GCCTT":922962, "GCCTC":799114, "GCCTG":1283875, "GCCCA":1256550, "GCCCT":655834, "GCCCC":918768, "GCCCG":1525522, "GCCGA":2265586, "GCCGT":1197023, "GCCGC":1520017, "GCCGG":2939484, "GCGAA":3204151, "GCGAT":1721325, "GCGAC":1763520, "GCGAG":3420286, "GCGTA":2059072, "GCGTT":998372, "GCGTC":1229260, "GCGTG":1937001, "GCGCA":1836238, "GCGCT":1068042, "GCGCC":1282972, "GCGCG":2183361, "GCGGA":2883885, "GCGGT":1754281, "GCGGC":2247976, "GCGGG":5534643, "GGAAA":3550567, "GGAAT":1431798, "GGAAC":1864912, "GGAAG":3883007, "GGATA":1735692, "GGATT":1109858, "GGATC":1094832, "GGATG":2286024, "GGACA":2113494, "GGACT":1207993, "GGACC":1416123, "GGACG":2490041, "GGAGA":3661045, "GGAGT":1846009, "GGAGC":2951411, "GGAGG":5026268, "GGTAA":2186118, "GGTAT":1336117, "GGTAC":1943375, "GGTAG":2707463, "GGTTA":2062891, "GGTTT":1420260, "GGTTC":2797188, "GGTTG":2216299, "GGTCA":1409178, "GGTCT":1514962, "GGTCC":1108797, "GGTCG":1542019, "GGTGA":2681258, "GGTGT":1809715, "GGTGC":1962103, "GGTGG":3669945, "GGCAA":4547315, "GGCAT":1808897, "GGCAC":2164485, "GGCAG":4566833, "GGCTA":2437256, "GGCTT":1399229, "GGCTC":1300591, "GGCTG":2418582, "GGCCA":3188238, "GGCCT":1779351, "GGCCC":2337785, "GGCCG":4151725, "GGCGA":4512985, "GGCGT":2045213, "GGCGC":2692897, "GGCGG":5840492, "GGGAA":4628983, "GGGAT":2809322, "GGGAC":2949277, "GGGAG":5782224, "GGGTA":2866402, "GGGTT":3648819, "GGGTC":1886583, "GGGTG":4056969, "GGGCA":3662994, "GGGCT":2182604, "GGGCC":2597749, "GGGCG":5699632, "GGGGA":8343571, "GGGGT":7329684, "GGGGC":8321482, "GGGGG":28452915 }, "overrepresented_sequences": { } }, "command": "fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Klaas_kalisto/fastq/LW52-Friedl-plate2-CTCs_Z45_S2_R2_001.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Klaas_kalisto/results/fastq_trimmed/LW52-Friedl-plate2-CTCs_Z45_S2_R2_001_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Klaas_kalisto/results/qc/trimming/LW52-Friedl-plate2-CTCs_Z45_S2_R2_001.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Klaas_kalisto/results/qc/trimming/LW52-Friedl-plate2-CTCs_Z45_S2_R2_001.fastp.json " }