{ "summary": { "before_filtering": { "total_reads":137470436, "total_bases":2199526976, "q20_bases":2120561089, "q30_bases":2095521414, "q20_rate":0.964099, "q30_rate":0.952715, "read1_mean_length":16, "gc_content":0.570087 }, "after_filtering": { "total_reads":116129766, "total_bases":1858076256, "q20_bases":1822351063, "q30_bases":1808513658, "q20_rate":0.980773, "q30_rate":0.973326, "read1_mean_length":16, "gc_content":0.501687 } }, "filtering_result": { "passed_filter_reads": 116129766, "low_quality_reads": 2815572, "too_many_N_reads": 6010, "too_short_reads": 18519088, "too_long_reads": 0 }, "duplication": { "rate": 0, "histogram": [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], "mean_gc": [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0] }, "read1_before_filtering": { "total_reads": 137470436, "total_bases": 2199526976, "q20_bases": 2120561089, "q30_bases": 2095521414, "total_cycles": 16, "quality_curves": { "A":[30.803,30.9182,31.2597,31.285,31.3131,34.9762,34.9749,34.9526,34.8011,34.8168,34.7546,34.6959,34.6847,34.6663,34.6579,34.5583], "T":[31.4106,31.4442,31.5235,31.5295,31.5378,35.3431,35.3416,35.3266,35.2969,35.2725,35.2995,35.273,35.2678,35.267,35.1338,35.1604], "C":[31.4145,31.4234,31.4776,31.4867,31.4942,35.1939,35.1828,35.137,35.1231,35.1231,35.1122,35.1323,35.1065,35.0842,35.1187,34.962], "G":[31.1251,31.0628,31.27,31.2802,31.2594,34.885,34.8256,34.7462,34.5677,34.5223,34.6187,34.5375,34.503,34.484,34.4003,34.3909], "mean":[31.1669,31.1753,31.3579,31.3682,31.3677,35.0522,35.0197,34.9725,34.8765,34.8573,34.8266,34.7964,34.7672,34.7382,34.6894,34.6285] }, "content_curves": { "A":[0.217446,0.234854,0.238767,0.229799,0.225806,0.227661,0.22824,0.222941,0.244083,0.232964,0.270364,0.230037,0.252177,0.249929,0.26636,0.251534], "T":[0.248064,0.236755,0.228458,0.216411,0.212628,0.210677,0.201237,0.216367,0.193621,0.202689,0.145305,0.155206,0.154574,0.157252,0.133993,0.13734], "C":[0.146048,0.15748,0.164375,0.172922,0.174712,0.183554,0.181068,0.166235,0.219981,0.210175,0.176995,0.211257,0.192612,0.171098,0.197019,0.190729], "G":[0.388398,0.370887,0.368342,0.380772,0.386717,0.377902,0.389197,0.394144,0.341961,0.353805,0.406872,0.402967,0.400143,0.421192,0.402032,0.419805], "N":[4.39949e-05,2.37797e-05,5.76197e-05,9.56715e-05,0.000136669,0.00020627,0.000258863,0.000313376,0.000354564,0.00036773,0.000464143,0.000533366,0.000493488,0.000529532,0.000595364,0.000591451], "GC":[0.534446,0.528367,0.532717,0.553694,0.561429,0.561456,0.570265,0.560378,0.561942,0.56398,0.583867,0.614224,0.592756,0.59229,0.599052,0.610534] }, "kmer_count": { "AAAAA":37687177, "AAAAT":3030563, "AAAAC":2871631, "AAAAG":4275384, "AAATA":1557512, "AAATT":1331700, "AAATC":1380611, "AAATG":1484763, "AAACA":1926888, "AAACT":1146466, "AAACC":1357705, "AAACG":1638915, "AAAGA":2307304, "AAAGT":1665573, "AAAGC":2276947, "AAAGG":3019655, "AATAA":1208706, "AATAT":968449, "AATAC":1064097, 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"ACACG":959245, "ACAGA":1443833, "ACAGT":970687, "ACAGC":1279682, "ACAGG":1679457, "ACTAA":727523, "ACTAT":854139, "ACTAC":983779, "ACTAG":928420, "ACTTA":987737, "ACTTT":694884, "ACTTC":540555, "ACTTG":762624, "ACTCA":846099, "ACTCT":703782, "ACTCC":402275, "ACTCG":634151, "ACTGA":930436, "ACTGT":995266, "ACTGC":905048, "ACTGG":974843, "ACCAA":1354606, "ACCAT":880985, "ACCAC":978879, "ACCAG":1466321, "ACCTA":692549, "ACCTT":569656, "ACCTC":587715, "ACCTG":829206, "ACCCA":889344, "ACCCT":524911, "ACCCC":4338847, "ACCCG":813926, "ACCGA":1762099, "ACCGT":1130679, "ACCGC":1212674, "ACCGG":11994111, "ACGAA":1419490, "ACGAT":849590, "ACGAC":948425, "ACGAG":1514141, "ACGTA":1248137, "ACGTT":876733, "ACGTC":920642, "ACGTG":1307458, "ACGCA":1103222, "ACGCT":827395, "ACGCC":724645, "ACGCG":1563345, "ACGGA":1314539, "ACGGT":982042, "ACGGC":1198690, "ACGGG":1946442, "AGAAA":2065788, "AGAAT":926004, "AGAAC":1462148, "AGAAG":2176918, "AGATA":1177324, "AGATT":1027733, "AGATC":789480, "AGATG":1350777, "AGACA":1507177, "AGACT":854125, "AGACC":919092, "AGACG":1870752, "AGAGA":2265241, "AGAGT":1035584, "AGAGC":1405135, "AGAGG":2701856, "AGTAA":949765, "AGTAT":710127, "AGTAC":1233115, "AGTAG":1154304, "AGTTA":1032915, "AGTTT":949748, "AGTTC":1079585, "AGTTG":1307698, "AGTCA":1002779, "AGTCT":1015523, "AGTCC":980446, "AGTCG":1997291, "AGTGA":5418853, "AGTGT":1125445, "AGTGC":1048861, "AGTGG":1710814, "AGCAA":1458612, "AGCAT":795397, "AGCAC":1164956, "AGCAG":1783393, "AGCTA":1690938, "AGCTT":1275381, "AGCTC":791428, "AGCTG":1206730, "AGCCA":1179286, "AGCCT":828174, "AGCCC":652516, "AGCCG":1091498, "AGCGA":1600052, "AGCGT":1024683, "AGCGC":970033, "AGCGG":1733188, "AGGAA":1860744, "AGGAT":976168, "AGGAC":1295734, "AGGAG":2286633, "AGGTA":1294669, "AGGTT":1150677, "AGGTC":1079093, "AGGTG":1648375, "AGGCA":1698346, "AGGCT":1136510, "AGGCC":1115900, "AGGCG":1664546, "AGGGA":2430494, "AGGGT":1477323, "AGGGC":1743427, "AGGGG":4980972, "TAAAA":3104821, "TAAAT":920603, "TAAAC":879347, "TAAAG":1273805, "TAATA":911712, "TAATT":1464841, "TAATC":913376, "TAATG":904203, "TAACA":948109, "TAACT":647571, "TAACC":836280, "TAACG":810758, "TAAGA":1126834, "TAAGT":999767, "TAAGC":986165, "TAAGG":1331426, "TATAA":893037, "TATAT":1189835, "TATAC":1198507, "TATAG":5353772, "TATTA":4774200, "TATTT":1232270, "TATTC":921577, "TATTG":885196, "TATCA":816208, "TATCT":1023331, "TATCC":830896, "TATCG":1214551, "TATGA":853630, "TATGT":963381, "TATGC":1002377, "TATGG":1086656, "TACAA":1283488, "TACAT":1246638, "TACAC":1040696, "TACAG":1583136, "TACTA":875206, "TACTT":820689, "TACTC":575783, "TACTG":1056966, "TACCA":1635972, "TACCT":901069, "TACCC":906034, "TACCG":12486508, "TACGA":1294013, "TACGT":1392959, "TACGC":1449718, "TACGG":1556816, "TAGAA":1368297, "TAGAT":916276, "TAGAC":1212050, "TAGAG":1575414, "TAGTA":1001834, "TAGTT":1134438, "TAGTC":1077395, "TAGTG":5287586, "TAGCA":1241520, "TAGCT":1788778, "TAGCC":1095113, "TAGCG":1208127, "TAGGA":1395934, "TAGGT":1070758, 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"CACGT":866851, "CACGC":745994, "CACGG":1038993, "CAGAA":1625769, "CAGAT":1194543, "CAGAC":1807487, "CAGAG":1731522, "CAGTA":1016728, "CAGTT":989904, "CAGTC":1193183, "CAGTG":1453574, "CAGCA":1350668, "CAGCT":1252644, "CAGCC":865444, "CAGCG":1242620, "CAGGA":1470528, "CAGGT":974557, "CAGGC":1302613, "CAGGG":2285971, "CTAAA":1141505, "CTAAT":681539, "CTAAC":726198, "CTAAG":872192, "CTATA":5111982, "CTATT":995389, "CTATC":647569, "CTATG":630381, "CTACA":1134193, "CTACT":608155, "CTACC":2276128, "CTACG":900827, "CTAGA":1802914, "CTAGT":949629, "CTAGC":1537201, "CTAGG":1222477, "CTTAA":648787, "CTTAT":729548, "CTTAC":1635092, "CTTAG":780494, "CTTTA":898159, "CTTTT":982871, "CTTTC":779729, "CTTTG":1189483, "CTTCA":955181, "CTTCT":933921, "CTTCC":671280, "CTTCG":934090, "CTTGA":800594, "CTTGT":1026321, "CTTGC":1067306, "CTTGG":860493, "CTCAA":842626, "CTCAT":759037, "CTCAC":1091769, "CTCAG":866207, "CTCTA":909668, "CTCTT":724226, "CTCTC":838728, "CTCTG":952206, "CTCCA":575856, 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"GGTAA":1610999, "GGTAT":1158976, "GGTAC":1413002, "GGTAG":1905041, "GGTTA":1529306, "GGTTT":1203022, "GGTTC":3104830, "GGTTG":2240005, "GGTCA":1140564, "GGTCT":1504689, "GGTCC":1055841, "GGTCG":1232407, "GGTGA":2142457, "GGTGT":1660346, "GGTGC":1392252, "GGTGG":2685638, "GGCAA":2474397, "GGCAT":1226961, "GGCAC":1524662, "GGCAG":2618848, "GGCTA":1684428, "GGCTT":1173114, "GGCTC":1020120, "GGCTG":1966171, "GGCCA":1980228, "GGCCT":1260138, "GGCCC":1515406, "GGCCG":2401266, "GGCGA":2444853, "GGCGT":1514792, "GGCGC":1669476, "GGCGG":3406217, "GGGAA":2720701, "GGGAT":2793687, "GGGAC":1921162, "GGGAG":3033318, "GGGTA":2042812, "GGGTT":4063194, "GGGTC":1632035, "GGGTG":2723265, "GGGCA":2058922, "GGGCT":1978631, "GGGCC":1972965, "GGGCG":3132755, "GGGGA":5125686, "GGGGT":6203041, "GGGGC":4797683, "GGGGG":239380450 }, "overrepresented_sequences": { } }, "read1_after_filtering": { "total_reads": 116129766, "total_bases": 1858076256, "q20_bases": 1822351063, "q30_bases": 1808513658, "total_cycles": 16, "quality_curves": { "A":[31.0736,31.0756,31.4282,31.4711,31.5198,35.2598,35.2792,35.282,35.144,35.1949,35.1127,35.1223,35.0947,35.0931,35.0762,34.9974], "T":[31.4888,31.5427,31.6382,31.6589,31.6771,35.5245,35.5289,35.5122,35.5034,35.4792,35.5536,35.5165,35.5107,35.5058,35.3913,35.4365], "C":[31.581,31.5878,31.652,31.6826,31.7028,35.4788,35.4895,35.4833,35.4143,35.4311,35.438,35.4313,35.4234,35.4234,35.4227,35.2968], "G":[31.3375,31.4674,31.5895,31.6358,31.6542,35.4607,35.4531,35.4401,35.3771,35.3698,35.4122,35.3962,35.3966,35.3955,35.3754,35.3212], "mean":[31.3555,31.403,31.5696,31.6069,31.6344,35.427,35.4322,35.425,35.3482,35.3624,35.345,35.3494,35.3318,35.3298,35.2905,35.2341] }, "content_curves": { "A":[0.250942,0.273566,0.277918,0.267126,0.262116,0.26383,0.26419,0.257641,0.281832,0.268298,0.311719,0.263854,0.289458,0.286388,0.30524,0.287624], "T":[0.290669,0.277181,0.267169,0.252915,0.248388,0.246059,0.235032,0.252675,0.225919,0.236454,0.169038,0.180633,0.179871,0.183025,0.155791,0.159365], "C":[0.169696,0.183246,0.191333,0.201021,0.202846,0.212843,0.209751,0.192193,0.255315,0.243654,0.204923,0.244964,0.223014,0.197854,0.228354,0.220586], "G":[0.288657,0.266003,0.263578,0.278935,0.286644,0.277261,0.291015,0.297465,0.236895,0.251556,0.314227,0.310405,0.30754,0.332592,0.31041,0.332217], "N":[3.65798e-05,4.89969e-06,1.39499e-06,3.93525e-06,6.07079e-06,6.94051e-06,1.17799e-05,2.54887e-05,3.88186e-05,3.81556e-05,9.21125e-05,0.000144717,0.000116818,0.000141867,0.000205873,0.000207156], "GC":[0.458353,0.449249,0.454912,0.479956,0.48949,0.490103,0.500766,0.489658,0.49221,0.49521,0.51915,0.555369,0.530554,0.530446,0.538763,0.552803] }, "kmer_count": { "AAAAA":36257264, "AAAAT":2900883, "AAAAC":2701027, "AAAAG":4119149, "AAATA":1449972, "AAATT":1275428, "AAATC":1357055, "AAATG":1445712, "AAACA":1801548, "AAACT":1122073, 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"ACGGG":1907278, "AGAAA":1948147, "AGAAT":902288, "AGAAC":1431056, "AGAAG":2137261, "AGATA":1151955, "AGATT":1013523, "AGATC":780094, "AGATG":1335507, "AGACA":1474213, "AGACT":843911, "AGACC":897614, "AGACG":1843445, "AGAGA":2221997, "AGAGT":1019566, "AGAGC":1381245, "AGAGG":2658988, "AGTAA":918867, "AGTAT":696312, "AGTAC":1218480, "AGTAG":1137542, "AGTTA":1013816, "AGTTT":936851, "AGTTC":1070909, "AGTTG":1293282, "AGTCA":989747, "AGTCT":1006920, "AGTCC":971424, "AGTCG":1981242, "AGTGA":5374593, "AGTGT":1113532, "AGTGC":1037904, "AGTGG":1684714, "AGCAA":1416850, "AGCAT":784907, "AGCAC":1144359, "AGCAG":1758420, "AGCTA":1675295, "AGCTT":1266037, "AGCTC":784332, "AGCTG":1194159, "AGCCA":1152368, "AGCCT":820012, "AGCCC":625256, "AGCCG":1070815, "AGCGA":1575359, "AGCGT":1013280, "AGCGC":952170, "AGCGG":1699444, "AGGAA":1810857, "AGGAT":961123, "AGGAC":1275461, "AGGAG":2249211, "AGGTA":1273747, "AGGTT":1133603, "AGGTC":1069248, "AGGTG":1622856, "AGGCA":1666266, "AGGCT":1125242, "AGGCC":1085823, "AGGCG":1629540, "AGGGA":2381463, "AGGGT":1447435, "AGGGC":1698835, "AGGGG":4690049, "TAAAA":2922709, "TAAAT":883411, "TAAAC":842300, "TAAAG":1231261, "TAATA":874027, "TAATT":1440591, "TAATC":902412, "TAATG":889727, "TAACA":916274, "TAACT":637474, "TAACC":810049, "TAACG":792158, "TAAGA":1098479, "TAAGT":986563, "TAAGC":971504, "TAAGG":1308770, "TATAA":849802, "TATAT":1169053, "TATAC":1181996, "TATAG":5311102, "TATTA":4731903, "TATTT":1211911, "TATTC":913112, "TATTG":870298, "TATCA":804330, "TATCT":1015334, "TATCC":823755, "TATCG":1204694, "TATGA":840099, "TATGT":954110, "TATGC":993524, "TATGG":1071261, "TACAA":1252103, "TACAT":1231603, "TACAC":1025233, "TACAG":1556857, "TACTA":864438, "TACTT":813264, "TACTC":569898, "TACTG":1047588, "TACCA":1616904, "TACCT":891297, "TACCC":890976, "TACCG":12417220, "TACGA":1280108, "TACGT":1382901, "TACGC":1438770, "TACGG":1541754, "TAGAA":1339307, "TAGAT":904193, "TAGAC":1197717, "TAGAG":1554149, "TAGTA":986210, "TAGTT":1121706, "TAGTC":1067851, "TAGTG":5250176, "TAGCA":1226648, "TAGCT":1777549, "TAGCC":1082720, "TAGCG":1195365, "TAGGA":1378640, "TAGGT":1059421, "TAGGC":1249517, "TAGGG":1923681, "TTAAA":1287345, "TTAAT":1132821, "TTAAC":800005, "TTAAG":1088880, "TTATA":1193067, "TTATT":2253923, "TTATC":936301, "TTATG":1161972, "TTACA":1468913, "TTACT":974618, "TTACC":9956217, "TTACG":2023618, "TTAGA":929790, "TTAGT":1093981, "TTAGC":1102288, "TTAGG":1310160, "TTTAA":1101700, "TTTAT":1640255, "TTTAC":1941680, "TTTAG":1087788, "TTTTA":1638629, "TTTTT":2088403, "TTTTC":1389625, "TTTTG":1383582, "TTTCA":1251136, "TTTCT":1436020, "TTTCC":1059425, "TTTCG":1019704, "TTTGA":1158384, "TTTGT":1521611, "TTTGC":1191597, "TTTGG":1196739, "TTCAA":1035215, "TTCAT":1138298, "TTCAC":1112206, "TTCAG":2914614, "TTCTA":1376796, "TTCTT":1389725, "TTCTC":1257565, "TTCTG":1300085, "TTCCA":887974, "TTCCT":979546, "TTCCC":691233, "TTCCG":884992, "TTCGA":859920, "TTCGT":1282716, "TTCGC":883639, "TTCGG":855561, "TTGAA":962752, "TTGAT":1069208, "TTGAC":925498, "TTGAG":1173259, "TTGTA":1341253, "TTGTT":1505220, "TTGTC":1508862, "TTGTG":1329683, "TTGCA":2014383, "TTGCT":1277021, "TTGCC":798265, "TTGCG":1052896, "TTGGA":981266, "TTGGT":1396826, "TTGGC":920304, "TTGGG":1591738, "TCAAA":1348910, "TCAAT":846631, "TCAAC":760877, "TCAAG":954582, "TCATA":871520, "TCATT":1473126, "TCATC":668811, "TCATG":1081675, "TCACA":1097331, "TCACT":759875, "TCACC":755041, "TCACG":817418, "TCAGA":2092409, "TCAGT":1259289, "TCAGC":1320045, "TCAGG":1194453, "TCTAA":784920, "TCTAT":988878, "TCTAC":1335949, "TCTAG":1600888, "TCTTA":1026668, "TCTTT":1008533, "TCTTC":876000, "TCTTG":1126253, "TCTCA":1316836, "TCTCT":985551, "TCTCC":532892, "TCTCG":1710941, "TCTGA":2736821, "TCTGT":992540, "TCTGC":927569, "TCTGG":1196181, "TCCAA":1387333, "TCCAT":839292, "TCCAC":773865, "TCCAG":943492, "TCCTA":1036991, "TCCTT":959249, "TCCTC":586283, "TCCTG":874032, "TCCCA":531897, "TCCCT":727404, "TCCCC":374823, "TCCCG":511535, "TCCGA":782106, "TCCGT":931251, "TCCGC":523130, "TCCGG":811563, "TCGAA":1036518, "TCGAT":716642, "TCGAC":955927, "TCGAG":983719, "TCGTA":2121905, "TCGTT":995750, "TCGTC":1993584, "TCGTG":1066618, "TCGCA":728753, "TCGCT":807095, "TCGCC":783581, "TCGCG":869268, "TCGGA":863798, "TCGGT":928796, "TCGGC":789200, "TCGGG":1335486, "TGAAA":1920341, "TGAAT":772335, "TGAAC":1592373, "TGAAG":1724025, "TGATA":859854, "TGATT":1429614, "TGATC":960545, "TGATG":1397184, "TGACA":1310431, "TGACT":917506, "TGACC":706796, "TGACG":951302, "TGAGA":1432194, "TGAGT":1826470, "TGAGC":1002556, "TGAGG":1790827, "TGTAA":1117735, "TGTAT":1230756, "TGTAC":1941167, "TGTAG":1208787, "TGTTA":1530554, "TGTTT":1368397, "TGTTC":1272708, "TGTTG":1287994, "TGTCA":1229693, "TGTCT":1470701, "TGTCC":1183195, "TGTCG":927147, "TGTGA":1218896, "TGTGT":1398096, "TGTGC":1552023, "TGTGG":1584491, "TGCAA":2199311, "TGCAT":962757, "TGCAC":1093573, "TGCAG":1317706, "TGCTA":1609118, "TGCTT":984253, "TGCTC":860781, "TGCTG":1166522, "TGCCA":1181636, "TGCCT":956582, "TGCCC":528460, "TGCCG":894907, "TGCGA":1147297, "TGCGT":1147534, "TGCGC":768388, "TGCGG":1324431, "TGGAA":1155742, "TGGAT":830176, "TGGAC":995521, "TGGAG":1500662, "TGGTA":1338527, "TGGTT":1512479, "TGGTC":1243382, "TGGTG":1730751, "TGGCA":1342043, "TGGCT":1170024, "TGGCC":942517, "TGGCG":1238355, "TGGGA":1426683, "TGGGT":1374475, "TGGGC":1289858, "TGGGG":4181759, "CAAAA":3817971, "CAAAT":744036, "CAAAC":1292871, "CAAAG":1699669, "CAATA":815826, "CAATT":932236, "CAATC":829686, "CAATG":918594, "CAACA":1165056, "CAACT":732051, "CAACC":1214999, "CAACG":1206639, "CAAGA":1418398, "CAAGT":841842, "CAAGC":1062210, "CAAGG":1786094, "CATAA":954361, "CATAT":638389, "CATAC":858444, "CATAG":1056484, "CATTA":2078653, "CATTT":1042223, "CATTC":604579, "CATTG":668875, "CATCA":769027, "CATCT":952989, "CATCC":501491, "CATCG":633140, "CATGA":1024122, "CATGT":2092793, "CATGC":1049393, "CATGG":1186255, "CACAA":1248325, "CACAT":916197, "CACAC":733338, "CACAG":1010875, "CACTA":690699, "CACTT":499776, "CACTC":646607, "CACTG":657789, "CACCA":944016, "CACCT":584560, "CACCC":552952, "CACCG":857503, "CACGA":986582, "CACGT":857653, "CACGC":731865, "CACGG":1019346, "CAGAA":1579241, "CAGAT":1180346, "CAGAC":1776670, "CAGAG":1705159, "CAGTA":1001462, "CAGTT":979936, "CAGTC":1182491, "CAGTG":1439606, "CAGCA":1326197, "CAGCT":1240787, "CAGCC":845178, "CAGCG":1224222, "CAGGA":1443832, "CAGGT":961682, "CAGGC":1276731, "CAGGG":2242582, "CTAAA":1108089, "CTAAT":671694, "CTAAC":714020, "CTAAG":862149, "CTATA":5074822, "CTATT":987369, "CTATC":641777, "CTATG":624572, "CTACA":1119247, "CTACT":602595, "CTACC":2259446, "CTACG":893410, "CTAGA":1787737, "CTAGT":942173, "CTAGC":1525457, "CTAGG":1211823, "CTTAA":635848, "CTTAT":722188, "CTTAC":1623062, "CTTAG":773595, "CTTTA":890178, "CTTTT":974964, "CTTTC":774545, "CTTTG":1180469, "CTTCA":945792, "CTTCT":927467, "CTTCC":665750, "CTTCG":927575, "CTTGA":793803, "CTTGT":1019606, "CTTGC":1060214, "CTTGG":852415, "CTCAA":829249, "CTCAT":752822, "CTCAC":1082144, "CTCAG":857917, "CTCTA":902354, "CTCTT":719142, "CTCTC":831799, "CTCTG":945246, "CTCCA":568917, "CTCCT":495321, "CTCCC":403778, "CTCCG":512609, "CTCGA":659285, "CTCGT":1450163, "CTCGC":690336, "CTCGG":791954, "CTGAA":2566400, "CTGAT":970359, "CTGAC":925325, "CTGAG":1169005, "CTGTA":1235481, "CTGTT":823970, "CTGTC":814265, "CTGTG":872823, "CTGCA":942324, "CTGCT":1142202, "CTGCC":711610, "CTGCG":874946, "CTGGA":932050, "CTGGT":1100850, "CTGGC":935054, "CTGGG":1728986, "CCAAA":2095480, "CCAAT":666950, "CCAAC":980705, "CCAAG":1133871, "CCATA":612853, "CCATT":889840, "CCATC":618000, "CCATG":972007, "CCACA":964174, "CCACT":511693, "CCACC":752264, "CCACG":890174, "CCAGA":1392228, "CCAGT":944479, "CCAGC":987411, "CCAGG":1306314, "CCTAA":596806, "CCTAT":4484619, "CCTAC":1020710, "CCTAG":903327, "CCTTA":541256, "CCTTT":672525, "CCTTC":863056, "CCTTG":586011, "CCTCA":767251, "CCTCT":721658, "CCTCC":445068, "CCTCG":550095, "CCTGA":842549, "CCTGT":706149, "CCTGC":770741, "CCTGG":901881, "CCCAA":857780, "CCCAT":543371, "CCCAC":488325, "CCCAG":834291, "CCCTA":4456059, "CCCTT":381154, "CCCTC":534410, "CCCTG":529937, "CCCCA":555043, "CCCCT":4105615, "CCCCC":431330, "CCCCG":509808, "CCCGA":703904, "CCCGT":479243, "CCCGC":546180, "CCCGG":892886, "CCGAA":1328468, "CCGAT":783356, "CCGAC":787403, "CCGAG":1479249, "CCGTA":1029849, "CCGTT":567270, "CCGTC":1033331, "CCGTG":847525, "CCGCA":878458, "CCGCT":591652, "CCGCC":700467, "CCGCG":929489, "CCGGA":1889013, "CCGGT":1039496, "CCGGC":9363382, "CCGGG":2670296, "CGAAA":1921578, "CGAAT":775250, "CGAAC":1189598, "CGAAG":1556349, "CGATA":952029, "CGATT":903129, "CGATC":771803, "CGATG":874269, "CGACA":1019945, "CGACT":746835, "CGACC":666096, "CGACG":1107436, "CGAGA":1741538, "CGAGT":905217, "CGAGC":995820, "CGAGG":1945035, "CGTAA":1171972, "CGTAT":2217687, "CGTAC":1278396, "CGTAG":1174951, "CGTTA":791177, "CGTTT":791211, "CGTTC":877022, "CGTTG":858398, "CGTCA":833211, "CGTCT":1876803, "CGTCC":878402, "CGTCG":1197542, "CGTGA":1142789, "CGTGT":852703, "CGTGC":986193, "CGTGG":1516805, "CGCAA":1160761, "CGCAT":664866, "CGCAC":699438, "CGCAG":1182083, "CGCTA":836009, "CGCTT":634727, "CGCTC":569846, "CGCTG":929581, "CGCCA":962864, "CGCCT":540197, "CGCCC":570609, "CGCCG":891461, "CGCGA":1173632, "CGCGT":1220772, "CGCGC":809587, "CGCGG":1392390, "CGGAA":1654812, "CGGAT":835993, "CGGAC":948336, "CGGAG":1818255, "CGGTA":1129428, "CGGTT":1024517, "CGGTC":848382, "CGGTG":1398035, "CGGCA":3197525, "CGGCT":1610849, "CGGCC":3544966, "CGGCG":3068645, "CGGGA":1832264, "CGGGT":1213586, "CGGGC":1438776, "CGGGG":4506019, "GAAAA":3138386, "GAAAT":884149, "GAAAC":1166989, "GAAAG":2569061, "GAATA":837151, "GAATT":615243, "GAATC":657179, "GAATG":1218725, "GAACA":1376652, "GAACT":873275, "GAACC":4793522, "GAACG":1515200, "GAAGA":2117597, "GAAGT":1037571, "GAAGC":1464048, "GAAGG":2593337, "GATAA":999275, "GATAT":880941, "GATAC":978973, "GATAG":1310853, "GATTA":1589476, "GATTT":908106, "GATTC":864190, "GATTG":1017269, "GATCA":1000484, "GATCT":696280, "GATCC":786667, "GATCG":1034621, "GATGA":1394589, "GATGT":1298020, "GATGC":1177221, "GATGG":1765164, "GACAA":1633195, "GACAT":1231837, "GACAC":732198, "GACAG":1418297, "GACTA":903770, "GACTT":788033, "GACTC":641752, "GACTG":973215, "GACCA":915231, "GACCT":587008, "GACCC":604904, "GACCG":917111, "GACGA":1374132, "GACGT":1065627, "GACGC":1123471, "GACGG":1607873, "GAGAA":2134683, "GAGAT":1088954, "GAGAC":1256480, "GAGAG":2510158, "GAGTA":958614, "GAGTT":883664, "GAGTC":1638444, "GAGTG":1323106, "GAGCA":1382546, "GAGCT":933664, "GAGCC":867110, "GAGCG":1518636, "GAGGA":2074723, "GAGGT":1480727, "GAGGC":1678819, "GAGGG":3591873, "GTAAA":1545395, "GTAAT":962252, "GTAAC":957913, "GTAAG":1264833, "GTATA":865814, "GTATT":2045152, "GTATC":1307657, "GTATG":963379, "GTACA":1411325, "GTACT":982883, "GTACC":1707285, "GTACG":1607885, "GTAGA":1289380, "GTAGT":1104241, "GTAGC":1381058, "GTAGG":1623215, "GTTAA":953441, "GTTAT":1056795, "GTTAC":1860715, "GTTAG":1215312, "GTTTA":1036097, "GTTTT":1109246, "GTTTC":1074449, "GTTTG":1121090, "GTTCA":2813442, "GTTCT":1520136, "GTTCC":923199, "GTTCG":931424, "GTTGA":1100311, "GTTGT":1357070, "GTTGC":1801431, "GTTGG":1589506, "GTCAA":1014940, "GTCAT":866942, "GTCAC":830000, "GTCAG":1380705, "GTCTA":1116696, "GTCTT":707418, "GTCTC":1208539, "GTCTG":2624730, "GTCCA":1530281, "GTCCT":914345, "GTCCC":565567, "GTCCG":917771, "GTCGA":1226846, "GTCGT":1968382, "GTCGC":855520, "GTCGG":1211063, "GTGAA":1405390, "GTGAT":1260243, "GTGAC":1154137, "GTGAG":5763888, "GTGTA":1220376, "GTGTT":1277450, "GTGTC":1221718, "GTGTG":1468555, "GTGCA":1443135, "GTGCT":1004597, "GTGCC":915378, "GTGCG":1389909, "GTGGA":1511033, "GTGGT":1621664, "GTGGC":1520364, "GTGGG":2746777, "GCAAA":2304603, "GCAAT":1094339, "GCAAC":1765452, "GCAAG":1888055, "GCATA":977629, "GCATT":782914, "GCATC":840839, "GCATG":1069470, "GCACA":1417373, "GCACT":901191, "GCACC":789924, "GCACG":1149826, "GCAGA":1861049, "GCAGT":1381040, "GCAGC":1306578, "GCAGG":2053367, "GCTAA":1355571, "GCTAT":911527, "GCTAC":1382942, "GCTAG":2030549, "GCTTA":898146, "GCTTT":1050121, "GCTTC":1037566, "GCTTG":1158344, "GCTCA":796815, "GCTCT":934930, "GCTCC":591041, "GCTCG":856258, "GCTGA":1280545, "GCTGT":1112785, "GCTGC":1117906, "GCTGG":1597982, "GCCAA":1415178, "GCCAT":891151, "GCCAC":1166070, "GCCAG":1567304, "GCCTA":978688, "GCCTT":741526, "GCCTC":800470, "GCCTG":1006440, "GCCCA":829994, "GCCCT":562343, "GCCCC":595410, "GCCCG":924142, "GCCGA":1368655, "GCCGT":945523, "GCCGC":943871, "GCCGG":1816363, "GCGAA":1910402, "GCGAT":1153664, "GCGAC":1074488, "GCGAG":1971471, "GCGTA":1566574, "GCGTT":805437, "GCGTC":1099948, "GCGTG":1442873, "GCGCA":1116741, "GCGCT":753525, "GCGCC":874059, "GCGCG":1336810, "GCGGA":1630928, "GCGGT":1372603, "GCGGC":1425201, "GCGGG":3171498, "GGAAA":2183342, "GGAAT":961956, "GGAAC":1283327, "GGAAG":2312817, "GGATA":1268681, "GGATT":968473, "GGATC":1006606, "GGATG":2064741, "GGACA":1418311, "GGACT":867743, "GGACC":979424, "GGACG":1592007, "GGAGA":2128541, "GGAGT":1259717, "GGAGC":1734557, "GGAGG":2903043, "GGTAA":1544323, "GGTAT":1131527, "GGTAC":1394204, "GGTAG":1871425, "GGTTA":1474072, "GGTTT":1119962, "GGTTC":3070908, "GGTTG":2177363, "GGTCA":1126266, "GGTCT":1492288, "GGTCC":1043460, "GGTCG":1213728, "GGTGA":2091753, "GGTGT":1610569, "GGTGC":1364348, "GGTGG":2514951, "GGCAA":2370444, "GGCAT":1210214, "GGCAC":1480535, "GGCAG":2563543, "GGCTA":1665535, "GGCTT":1161206, "GGCTC":1009569, "GGCTG":1941788, "GGCCA":1889075, "GGCCT":1245047, "GGCCC":1293663, "GGCCG":2285497, "GGCGA":2372871, "GGCGT":1486011, "GGCGC":1562222, "GGCGG":3137730, "GGGAA":2516120, "GGGAT":2745941, "GGGAC":1876192, "GGGAG":2903590, "GGGTA":1957221, "GGGTT":3888320, "GGGTC":1605587, "GGGTG":2498666, "GGGCA":1926887, "GGGCT":1949778, "GGGCC":1633648, "GGGCG":2764119, "GGGGA":4809701, "GGGGT":5763705, "GGGGC":4036083, "GGGGG":14004740 }, "overrepresented_sequences": { } }, "command": "fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Klaas_kalisto/fastq/LW52-Friedl-plate1CTCs_Z44_S1_R2_001.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Klaas_kalisto/results/fastq_trimmed/LW52-Friedl-plate1CTCs_Z44_S1_R2_001_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Klaas_kalisto/results/qc/trimming/LW52-Friedl-plate1CTCs_Z44_S1_R2_001.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Klaas_kalisto/results/qc/trimming/LW52-Friedl-plate1CTCs_Z44_S1_R2_001.fastp.json " }