<STREME version="5.4.1" release="Sat Aug 21 19:23:23 2021 -0700">
  <model>
    <command_line>streme --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out -dna --p /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/seqs-centered --minw 6 --maxw 15 --order 2</command_line>
    <train_positives count="18214" positions="1821400" maxlen="100" file="/scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/seqs-centered"/>
    <train_negatives count="18214" positions="1821400" from="shuffled"/>
    <test_positives count="2023" positions="202300"/>
    <test_negatives count="2023" positions="202300"/>
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>both</strands>
    <sequence_db A="0.214" C="0.286" G="0.286" T="0.214"/>
    <background_frequencies source="--negatives--" order="2">
      <alphabet_array>
        <value letter_id="A">0.214</value>
        <value letter_id="C">0.286</value>
        <value letter_id="G">0.286</value>
        <value letter_id="T">0.214</value>
      </alphabet_array>
    </background_frequencies>
    <stop thresh_type="pvalue" thresh="0.05"/>
    <objfun>Differential Enrichment</objfun>
    <test>Fisher Exact Test</test>
    <minw>6</minw>
    <maxw>15</maxw>
    <kmer>3</kmer>
    <hofract>0.1</hofract>
    <neval>25</neval>
    <nref>4</nref>
    <niter>20</niter>
    <patience>3</patience>
    <seed>0</seed>
    <useer>no</useer>
    <minscore>0</minscore>
    <ignore_depth>5</ignore_depth>
    <nsubsets>1</nsubsets>
    <min_pal_ratio>0.85</min_pal_ratio>
    <max_pal_ed>5</max_pal_ed>
    <cand>no</cand>
    <experimental>no</experimental>
    <totallength>0</totallength>
    <align>center</align>
    <host>fv-az119-924</host>
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      <pos A="0.172892" C="0.000200736" G="0.000200736" T="0.826707"/>
    </motif>
    <motif id="41-AGCAGCAGCAGCAGS" alt="STREME-41" width="15" initial_width="14" seed="AGCAGCAGCAGCAGG" score_threshold="15.205" train_pos_count="84" train_neg_count="15" train_log_pvalue="-12.4142" train_pvalue="3.9e-013" train_dtc="-1.0" train_bernoulli="-1" test_pos_count="3" test_neg_count="5" test_log_pvalue="-0.0676722" test_pvalue="8.6e-001" test_log_evalue="1.54511" test_evalue="3.5e+001" test_dtc="-1.0" test_bernoulli="-1" is_palindromic="no" elapsed_time="1753.4" total_sites="84" site_distr=" 2 2 2 3 0 3 1 4 0 0 0 1 1 0 3 2 0 1 0 1 0 2 1 1 1 2 0 1 1 1 0 1 1 1 0 2 0 2 0 1 1 1 1 2 0 0 0 1 0 0 2 2 0 0 2 0 1 1 2 0 1 0 1 2 2 0 1 1 1 0 0 1 1 0 1 0 0 0 2 0 1 0 2 1 2" max_sites="5" site_hist=" 0 70 7 3 2 2">
      <pos A="0.796531" C="0.196207" G="0.000524327" T="0.00673848"/>
      <pos A="0.0257798" C="0.0766902" G="0.897139" T="0.000391368"/>
      <pos A="0.000391368" C="0.968036" G="0.0311812" T="0.000391368"/>
      <pos A="0.960477" C="0.0259128" G="0.0132188" T="0.000391368"/>
      <pos A="0.038474" C="0.0132186" G="0.947916" T="0.000391368"/>
      <pos A="0.063863" C="0.909833" G="0.0259128" T="0.000391368"/>
      <pos A="0.719286" C="0.0513012" G="0.025913" T="0.2035"/>
      <pos A="0.101946" C="0.038607" G="0.859056" T="0.000391368"/>
      <pos A="0.000391368" C="0.917259" G="0.063996" T="0.018354"/>
      <pos A="0.828267" C="0.0639955" G="0.0692639" T="0.038474"/>
      <pos A="0.000391368" C="0.114772" G="0.884445" T="0.000391368"/>
      <pos A="0.000391368" C="0.96061" G="0.038607" T="0.000391368"/>
      <pos A="0.757368" C="0.063996" G="0.152856" T="0.0257798"/>
      <pos A="0.0257798" C="0.127467" G="0.846362" T="0.000391368"/>
      <pos A="0.0257798" C="0.592475" G="0.381354" T="0.000391368"/>
    </motif>
  </motifs>
  <reason_for_stopping>Stopped because 3 consecutive motifs exceeded the p-value threshold (0.05).</reason_for_stopping>
  <run_time cpu="1785.73"/>
</STREME>
