Invoking:
  getsize /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.103584
Invoking:
  fasta-most -min 50 < /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.11903
Invoking:
  fasta-center -dna -len 100 < /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta 1> /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.155073
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 2 /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background
Finished invoke:
  name: bg  status: 0  time: 0.09144
Invoking:
  meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/seqs-centered -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 15 -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 2406.44707
Invoking:
  streme --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out -dna --p /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/seqs-centered --minw 6 --maxw 15 --order 2
Finished invoke:
  name: streme  status: 0  time: 1787.65794
Invoking:
  centrimo -seqlen 291 -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/centrimo_out -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml combined.meme
Finished invoke:
  name: centrimo  status: 256  time: 0.248515
Invoking:
  tomtom -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml combined.meme
Finished invoke:
  name: meme_tomtom  status: 0  time: 0.217019
Invoking:
  tomtom -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml combined.meme
Finished invoke:
  name: streme_tomtom  status: 0  time: 0.356933
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/combined.meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/combined.meme 1> /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 1.469132
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary WAAAAAWAMAAAAAW /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 12.724769
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary RARKWGCTGGGATTA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 4.385833
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary GGAGGCBGAGGCRGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 17.340533
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary GGTYTCACYATGTTG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 4.635055
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary GCCACCAYGCCYRGC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 5.862708
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary TGGTCTYGAACTCCT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.156334
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary AGRATCRCTTGARSY /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.89002
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary GCTGGAGTGCAGTGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.36675
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary YGATCTCRGCTCACT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.843694
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary 4-CCAGCCTGGSCAACA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 5.303439
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary 5-ACCCYRTCTCTA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 5.559363
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary 6-CRTGAGCCACCR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 4.711377
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary 9-AAAATTAGCYRGGCR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.817858
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary 12-CCCCWCCCCCR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 15.840419
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary 14-GAGYRAGACTCYGTC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 5.258136
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -keepprimary -primary 20-TGGTGAA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 16.828038
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_1 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif WAAAAAWAMAAAAAW /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo1  status: 0  time: 3.253644
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_2 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif RARKWGCTGGGATTA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo2  status: 0  time: 2.841508
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_3 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif GGAGGCBGAGGCRGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo3  status: 0  time: 3.024202
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_4 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif GGTYTCACYATGTTG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo4  status: 0  time: 2.866468
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_5 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif GCCACCAYGCCYRGC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo5  status: 0  time: 2.858532
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_6 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif TGGTCTYGAACTCCT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo6  status: 0  time: 2.856214
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_7 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif AGRATCRCTTGARSY /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo7  status: 0  time: 2.868342
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_8 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif GCTGGAGTGCAGTGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo8  status: 0  time: 2.900321
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_9 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif YGATCTCRGCTCACT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo9  status: 0  time: 2.88268
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_10 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif 4-CCAGCCTGGSCAACA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo10  status: 0  time: 2.949667
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_11 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif 5-ACCCYRTCTCTA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo11  status: 0  time: 2.767528
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_12 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif 6-CRTGAGCCACCR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo12  status: 0  time: 2.808008
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_13 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif 9-AAAATTAGCYRGGCR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo13  status: 0  time: 2.919032
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_14 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif 12-CCCCWCCCCCR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo14  status: 0  time: 2.757446
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_15 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif 14-GAGYRAGACTCYGTC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo15  status: 0  time: 2.955553
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/fimo_out_16 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background --motif 20-TGGTGAA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta
Finished invoke:
  name: fimo16  status: 0  time: 2.613878
Writing output
Invoking:
  meme-chip_html_to_tsv /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme-chip.html /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/summary.tsv "meme-chip -db combined.meme /scratch/jngalang/MotifAnalysis/PeakFiles/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks.fasta -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks -meme-nmotifs 10" 5.4.1 "Sat Aug 21 19\:23\:23 2021 -0700"
Finished invoke:
  name: summary  status: 0  time: 0.287776
Done