<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<!-- Document definition -->
<!DOCTYPE MEME[
<!ELEMENT MEME (
  training_set,
  model, 
  motifs, 
  scanned_sites_summary?
)>
<!ATTLIST MEME 
  version CDATA #REQUIRED
  release CDATA #REQUIRED
>
<!-- Training-set elements -->
<!ELEMENT training_set (alphabet, ambigs, sequence*, letter_frequencies)>
<!ATTLIST training_set primary_sequences CDATA #REQUIRED primary_count CDATA #REQUIRED primary_positions CDATA #REQUIRED
  control_sequences CDATA "" control_count CDATA "" control_positions CDATA "">
<!ELEMENT alphabet (letter*)>
<!ATTLIST alphabet name CDATA #REQUIRED>
<!ELEMENT ambigs (letter*)>
<!ELEMENT letter EMPTY>
<!ATTLIST letter id ID #REQUIRED>
<!ATTLIST letter symbol CDATA #REQUIRED>
<!ATTLIST letter equals CDATA #IMPLIED>
<!ATTLIST letter aliases CDATA #IMPLIED>
<!ATTLIST letter complement CDATA #IMPLIED>
<!ATTLIST letter name CDATA #IMPLIED>
<!ATTLIST letter colour CDATA #IMPLIED>
<!ELEMENT sequence EMPTY>
<!ATTLIST sequence id ID #REQUIRED
                   name CDATA #REQUIRED
                   length CDATA #REQUIRED
                   weight CDATA #REQUIRED
>
<!ELEMENT letter_frequencies (alphabet_array)>

<!-- Model elements -->
<!ELEMENT model (
  command_line,
  host,
  type,
  nmotifs,
  evalue_threshold,
  object_function,
  spfun,
  min_width,
  max_width,
  wg,
  ws,
  endgaps,
  minsites,
  maxsites,
  wnsites,
  spmap,
  spfuzz,
  prior,
  beta,
  maxiter,
  distance,
  num_positions,
  seed,
  hsfrac,
  searchsize,
  maxsize,
  norand,
  csites,
  strands,
  brief,
  psp_file,
  priors_file,
  reason_for_stopping,
  background_frequencies
)>
<!ELEMENT command_line (#PCDATA)*>
<!ELEMENT host (#PCDATA)*>
<!ELEMENT type (#PCDATA)*>
<!ELEMENT nmotifs (#PCDATA)*>
<!ELEMENT evalue_threshold (#PCDATA)*>
<!ELEMENT object_function (#PCDATA)*>
<!ELEMENT spfun (#PCDATA)*>
<!ELEMENT min_width (#PCDATA)*>
<!ELEMENT max_width (#PCDATA)*>
<!ELEMENT wg (#PCDATA)*>
<!ELEMENT ws (#PCDATA)*>
<!ELEMENT endgaps (#PCDATA)*>
<!ELEMENT minsites (#PCDATA)*>
<!ELEMENT maxsites (#PCDATA)*>
<!ELEMENT wnsites (#PCDATA)*>
<!ELEMENT spmap (#PCDATA)*>
<!ELEMENT spfuzz (#PCDATA)*>
<!ELEMENT prior (#PCDATA)*>
<!ELEMENT beta (#PCDATA)*>
<!ELEMENT maxiter (#PCDATA)*>
<!ELEMENT distance (#PCDATA)*>
<!ELEMENT num_positions (#PCDATA)*>
<!ELEMENT seed (#PCDATA)*>
<!ELEMENT hsfrac (#PCDATA)*>
<!ELEMENT searchsize (#PCDATA)*>
<!ELEMENT maxsize (#PCDATA)*>
<!ELEMENT norand (#PCDATA)*>
<!ELEMENT csites (#PCDATA)*>
<!ELEMENT strands (#PCDATA)*>
<!ELEMENT brief (#PCDATA)*>
<!ELEMENT psp_file (#PCDATA)*>
<!ELEMENT priors_file (#PCDATA)*>
<!ELEMENT reason_for_stopping (#PCDATA)*>
<!ELEMENT background_frequencies (alphabet_array)>
<!ATTLIST background_frequencies source CDATA #REQUIRED
		   order CDATA #REQUIRED>

<!-- Motif elements -->
<!ELEMENT motifs (motif*)>
<!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
<!ATTLIST motif id ID #REQUIRED
                name CDATA #REQUIRED
                alt CDATA ""
                width CDATA #REQUIRED
                sites CDATA #REQUIRED
                ic CDATA #REQUIRED
                re CDATA #REQUIRED
                llr CDATA #REQUIRED
                p_value CDATA #REQUIRED
                e_value CDATA #REQUIRED
                bayes_threshold CDATA #REQUIRED
                elapsed_time CDATA #REQUIRED
                url CDATA ""
>
<!ELEMENT scores (alphabet_matrix)>
<!ELEMENT probabilities (alphabet_matrix)>
<!ELEMENT regular_expression (#PCDATA)*>

<!-- Contributing site elements -->
<!-- Contributing sites are motif occurences found during the motif discovery phase -->
<!ELEMENT contributing_sites (contributing_site*)>
<!ELEMENT contributing_site (left_flank, site, right_flank)>
<!ATTLIST contributing_site sequence_id IDREF #REQUIRED
                          position CDATA #REQUIRED
                          strand (plus|minus|none) 'none'
                          pvalue CDATA #REQUIRED
>
<!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
<!ELEMENT left_flank (#PCDATA)>
<!-- The site contains the sequence for the motif instance -->
<!ELEMENT site (letter_ref*)>
<!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
<!ELEMENT right_flank (#PCDATA)>

<!-- Scanned site elements -->
<!-- Scanned sites are motif occurences found during the sequence scan phase -->
<!ELEMENT scanned_sites_summary (scanned_sites*)>
<!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
<!ELEMENT scanned_sites (scanned_site*)>
<!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
                        pvalue CDATA #REQUIRED
                        num_sites CDATA #REQUIRED>
<!ELEMENT scanned_site EMPTY>
<!ATTLIST scanned_site  motif_id IDREF #REQUIRED
                        strand (plus|minus|none) 'none'
                        position CDATA #REQUIRED
                        pvalue CDATA #REQUIRED>

<!-- Utility elements -->
<!-- A reference to a letter in the alphabet -->
<!ELEMENT letter_ref EMPTY>
<!ATTLIST letter_ref letter_id IDREF #REQUIRED>
<!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
<!ELEMENT alphabet_array (value*)>
<!ELEMENT value (#PCDATA)>
<!ATTLIST value letter_id IDREF #REQUIRED>

<!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
<!ELEMENT alphabet_matrix (alphabet_array*)>

]>
<!-- Begin document body -->
<MEME version="5.4.1" release="Sat Aug 21 19:23:23 2021 -0700">
<training_set primary_sequences="/scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/seqs-centered" primary_count="20237" primary_positions="2023700" control_sequences="--none--" control_count="0" control_positions="0">
<alphabet name="DNA" like="dna">
<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
<letter id="V" symbol="V" equals="ACG" name="Not T"/>
<letter id="H" symbol="H" equals="ACT" name="Not G"/>
<letter id="D" symbol="D" equals="AGT" name="Not C"/>
<letter id="B" symbol="B" equals="CGT" name="Not A"/>
<letter id="M" symbol="M" equals="AC" name="Amino"/>
<letter id="R" symbol="R" equals="AG" name="Purine"/>
<letter id="W" symbol="W" equals="AT" name="Weak"/>
<letter id="S" symbol="S" equals="CG" name="Strong"/>
<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
<letter id="K" symbol="K" equals="GT" name="Keto"/>
</alphabet>
<letter_frequencies>
<alphabet_array>
<value letter_id="A">0.214</value>
<value letter_id="C">0.286</value>
<value letter_id="G">0.286</value>
<value letter_id="T">0.214</value>
</alphabet_array>
</letter_frequencies>
</training_set>
<model>
<command_line>meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/seqs-centered -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 15 -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -dna -revcomp -nostatus </command_line>
<host>fv-az119-924</host>
<type>zoops</type>
<nmotifs>10</nmotifs>
<evalue_threshold>inf</evalue_threshold>
<object_function>E-value of product of p-values</object_function>
<spfun>E-value of product of p-values</spfun>
<min_width>6</min_width>
<max_width>15</max_width>
<wg>11</wg>
<ws>1</ws>
<endgaps>yes</endgaps>
<substring>yes</substring>
<minsites>2</minsites>
<maxsites>20237</maxsites>
<wnsites>0.8</wnsites>
<spmap>uni</spmap>
<spfuzz>0.5</spfuzz>
<prior>dirichlet</prior>
<beta>0.01</beta>
<maxiter>50</maxiter>
<distance>1e-05</distance>
<num_positions>2023700</num_positions>
<seed>0</seed>
<hsfrac>0</hsfrac>
<searchsize>100000</searchsize>
<maxsize>0</maxsize>
<norand>no</norand>
<csites>1000</csites>
<strands>both</strands>
<brief>1000</brief>
<psp_file></psp_file>
<priors_file></priors_file>
<reason_for_stopping>Stopped because requested number of motifs (10) found.</reason_for_stopping>
<background_frequencies source="/scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background" order="2">
<alphabet_array>
<value letter_id="A">0.21</value>
<value letter_id="C">0.29</value>
<value letter_id="G">0.29</value>
<value letter_id="T">0.21</value>
</alphabet_array>
</background_frequencies>
</model>
<motifs>
<motif id="motif_1" name="WAAAAAWAMAAAAAW" alt="MEME-1" width="15" sites="2720" ic="15.4" re="18.3" llr="34447" p_value="2.8e-855" e_value="5.5e-317" bayes_threshold="11.6095" elapsed_time="307.225370">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">83</value>
<value letter_id="C">-109</value>
<value letter_id="G">-645</value>
<value letter_id="T">121</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">187</value>
<value letter_id="C">-181</value>
<value letter_id="G">-311</value>
<value letter_id="T">-87</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">206</value>
<value letter_id="C">-160</value>
<value letter_id="G">-630</value>
<value letter_id="T">-309</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">201</value>
<value letter_id="C">-220</value>
<value letter_id="G">-334</value>
<value letter_id="T">-175</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">197</value>
<value letter_id="C">-165</value>
<value letter_id="G">-730</value>
<value letter_id="T">-132</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">215</value>
<value letter_id="C">-231</value>
<value letter_id="G">-604</value>
<value letter_id="T">-570</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">104</value>
<value letter_id="C">-222</value>
<value letter_id="G">-862</value>
<value letter_id="T">126</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">212</value>
<value letter_id="C">-804</value>
<value letter_id="G">-553</value>
<value letter_id="T">-143</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">32</value>
<value letter_id="C">71</value>
<value letter_id="G">-154</value>
<value letter_id="T">-38</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">216</value>
<value letter_id="C">-231</value>
<value letter_id="G">-662</value>
<value letter_id="T">-757</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">205</value>
<value letter_id="C">-285</value>
<value letter_id="G">-332</value>
<value letter_id="T">-180</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">202</value>
<value letter_id="C">-304</value>
<value letter_id="G">-341</value>
<value letter_id="T">-133</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">181</value>
<value letter_id="C">-157</value>
<value letter_id="G">-240</value>
<value letter_id="T">-91</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">185</value>
<value letter_id="C">-237</value>
<value letter_id="G">-240</value>
<value letter_id="T">-70</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">117</value>
<value letter_id="C">-323</value>
<value letter_id="G">-187</value>
<value letter_id="T">98</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.373162</value>
<value letter_id="C">0.136029</value>
<value letter_id="G">0.003309</value>
<value letter_id="T">0.487500</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.769118</value>
<value letter_id="C">0.082721</value>
<value letter_id="G">0.033456</value>
<value letter_id="T">0.114706</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.876103</value>
<value letter_id="C">0.095588</value>
<value letter_id="G">0.003676</value>
<value letter_id="T">0.024632</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.845588</value>
<value letter_id="C">0.063235</value>
<value letter_id="G">0.028676</value>
<value letter_id="T">0.062500</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.821691</value>
<value letter_id="C">0.092279</value>
<value letter_id="G">0.001838</value>
<value letter_id="T">0.084191</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.933088</value>
<value letter_id="C">0.058456</value>
<value letter_id="G">0.004412</value>
<value letter_id="T">0.004044</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.431985</value>
<value letter_id="C">0.062132</value>
<value letter_id="G">0.000735</value>
<value letter_id="T">0.505147</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.914706</value>
<value letter_id="C">0.001103</value>
<value letter_id="G">0.006250</value>
<value letter_id="T">0.077941</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.263235</value>
<value letter_id="C">0.475000</value>
<value letter_id="G">0.099632</value>
<value letter_id="T">0.162132</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.937500</value>
<value letter_id="C">0.058456</value>
<value letter_id="G">0.002941</value>
<value letter_id="T">0.001103</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.870588</value>
<value letter_id="C">0.040074</value>
<value letter_id="G">0.029044</value>
<value letter_id="T">0.060294</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.854044</value>
<value letter_id="C">0.035294</value>
<value letter_id="G">0.027206</value>
<value letter_id="T">0.083456</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.736029</value>
<value letter_id="C">0.097426</value>
<value letter_id="G">0.054779</value>
<value letter_id="T">0.111765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.759926</value>
<value letter_id="C">0.055882</value>
<value letter_id="G">0.054779</value>
<value letter_id="T">0.129412</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.473897</value>
<value letter_id="C">0.030882</value>
<value letter_id="G">0.079044</value>
<value letter_id="T">0.416176</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
[TA]AAAAA[TA]A[CA]AAAAA[AT]
</regular_expression>
<contributing_sites>
</contributing_sites>
</motif>
<motif id="motif_2" name="RARKWGCTGGGATTA" alt="MEME-2" width="15" sites="1116" ic="21.9" re="22.6" llr="17504" p_value="4.0e-510" e_value="2.9e-208" bayes_threshold="12.9081" elapsed_time="552.014857">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">155</value>
<value letter_id="C">-553</value>
<value letter_id="G">29</value>
<value letter_id="T">-312</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">223</value>
<value letter_id="C">-425</value>
<value letter_id="G">-1677</value>
<value letter_id="T">-787</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">124</value>
<value letter_id="C">-675</value>
<value letter_id="G">79</value>
<value letter_id="T">-1677</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1677</value>
<value letter_id="C">-369</value>
<value letter_id="G">73</value>
<value letter_id="T">124</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">128</value>
<value letter_id="C">-517</value>
<value letter_id="G">-534</value>
<value letter_id="T">117</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-302</value>
<value letter_id="C">-833</value>
<value letter_id="G">173</value>
<value letter_id="T">-397</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-787</value>
<value letter_id="C">171</value>
<value letter_id="G">-1677</value>
<value letter_id="T">-202</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-429</value>
<value letter_id="C">-417</value>
<value letter_id="G">-1677</value>
<value letter_id="T">221</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-175</value>
<value letter_id="C">-634</value>
<value letter_id="G">169</value>
<value letter_id="T">-787</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-168</value>
<value letter_id="C">-501</value>
<value letter_id="G">166</value>
<value letter_id="T">-441</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-212</value>
<value letter_id="C">-733</value>
<value letter_id="G">171</value>
<value letter_id="T">-1677</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">221</value>
<value letter_id="C">-634</value>
<value letter_id="G">-353</value>
<value letter_id="T">-1677</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1677</value>
<value letter_id="C">-27</value>
<value letter_id="G">-534</value>
<value letter_id="T">184</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1677</value>
<value letter_id="C">-272</value>
<value letter_id="G">-733</value>
<value letter_id="T">218</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">219</value>
<value letter_id="C">-434</value>
<value letter_id="G">-358</value>
<value letter_id="T">-1677</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.616487</value>
<value letter_id="C">0.006272</value>
<value letter_id="G">0.353047</value>
<value letter_id="T">0.024194</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.983871</value>
<value letter_id="C">0.015233</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000896</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.496416</value>
<value letter_id="C">0.002688</value>
<value letter_id="G">0.500896</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.022401</value>
<value letter_id="G">0.479391</value>
<value letter_id="T">0.498208</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.511649</value>
<value letter_id="C">0.008065</value>
<value letter_id="G">0.007168</value>
<value letter_id="T">0.473118</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.025986</value>
<value letter_id="C">0.000896</value>
<value letter_id="G">0.959677</value>
<value letter_id="T">0.013441</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000896</value>
<value letter_id="C">0.947133</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.051971</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.010753</value>
<value letter_id="C">0.016129</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.973118</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.062724</value>
<value letter_id="C">0.003584</value>
<value letter_id="G">0.932796</value>
<value letter_id="T">0.000896</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.065412</value>
<value letter_id="C">0.008961</value>
<value letter_id="G">0.915771</value>
<value letter_id="T">0.009857</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.048387</value>
<value letter_id="C">0.001792</value>
<value letter_id="G">0.949821</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.971326</value>
<value letter_id="C">0.003584</value>
<value letter_id="G">0.025090</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.240143</value>
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<value letter_id="T">0.752688</value>
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<value letter_id="G">0.024194</value>
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</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
[AG]A[GA][TG][AT]GCTGGGA[TC]TA
</regular_expression>
<contributing_sites>
</contributing_sites>
</motif>
<motif id="motif_3" name="GGAGGCBGAGGCRGG" alt="MEME-3" width="15" sites="2918" ic="16.9" re="15.3" llr="30853" p_value="8.8e-770" e_value="2.2e-187" bayes_threshold="11.3083" elapsed_time="794.856793">
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<value letter_id="T">-1815</value>
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<value letter_id="G">-210</value>
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<value letter_id="T">90</value>
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<value letter_id="C">-497</value>
<value letter_id="G">157</value>
<value letter_id="T">-1815</value>
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<alphabet_array>
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<value letter_id="C">-39</value>
<value letter_id="G">-158</value>
<value letter_id="T">-294</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-317</value>
<value letter_id="G">169</value>
<value letter_id="T">-1815</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-365</value>
<value letter_id="C">-1815</value>
<value letter_id="G">174</value>
<value letter_id="T">-405</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">123</value>
<value letter_id="G">-199</value>
<value letter_id="T">3</value>
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<alphabet_array>
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<value letter_id="G">71</value>
<value letter_id="T">-88</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-131</value>
<value letter_id="C">-212</value>
<value letter_id="G">152</value>
<value letter_id="T">-365</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-33</value>
<value letter_id="G">131</value>
<value letter_id="T">-1815</value>
</alphabet_array>
</alphabet_matrix>
</scores>
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<value letter_id="C">0.057231</value>
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<value letter_id="T">0.000000</value>
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<value letter_id="T">0.013023</value>
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<value letter_id="G">0.017478</value>
<value letter_id="T">0.000000</value>
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<value letter_id="C">0.027416</value>
<value letter_id="G">0.922550</value>
<value letter_id="T">0.007539</value>
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<alphabet_array>
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<value letter_id="T">0.009596</value>
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<alphabet_array>
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<alphabet_array>
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<value letter_id="C">0.032214</value>
<value letter_id="G">0.936600</value>
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<alphabet_array>
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<alphabet_array>
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<value letter_id="T">0.214531</value>
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<alphabet_array>
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<value letter_id="C">0.066827</value>
<value letter_id="G">0.473269</value>
<value letter_id="T">0.114462</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">0.066484</value>
<value letter_id="G">0.831734</value>
<value letter_id="T">0.016792</value>
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<alphabet_array>
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<value letter_id="C">0.229952</value>
<value letter_id="G">0.718643</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
GG[AC]GGC[TCG]G[AC]GG[CT][GA]G[GC]
</regular_expression>
<contributing_sites>
</contributing_sites>
</motif>
<motif id="motif_4" name="GGTYTCACYATGTTG" alt="MEME-4" width="15" sites="1066" ic="20.0" re="20.5" llr="15161" p_value="2.1e-428" e_value="2.3e-146" bayes_threshold="12.9106" elapsed_time="1031.072326">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">29</value>
<value letter_id="C">-495</value>
<value letter_id="G">132</value>
<value letter_id="T">-464</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-203</value>
<value letter_id="C">-527</value>
<value letter_id="G">166</value>
<value letter_id="T">-322</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-781</value>
<value letter_id="C">-668</value>
<value letter_id="G">-827</value>
<value letter_id="T">224</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-781</value>
<value letter_id="C">39</value>
<value letter_id="G">-827</value>
<value letter_id="T">156</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-627</value>
<value letter_id="G">-727</value>
<value letter_id="T">224</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">149</value>
<value letter_id="G">-827</value>
<value letter_id="T">-17</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">167</value>
<value letter_id="C">-327</value>
<value letter_id="G">-4</value>
<value letter_id="T">-349</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">169</value>
<value letter_id="G">-827</value>
<value letter_id="T">-228</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">92</value>
<value letter_id="G">-595</value>
<value letter_id="T">106</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-10</value>
<value letter_id="G">-133</value>
<value letter_id="T">-256</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-581</value>
<value letter_id="C">-306</value>
<value letter_id="G">-827</value>
<value letter_id="T">219</value>
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<alphabet_array>
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<value letter_id="C">-346</value>
<value letter_id="G">161</value>
<value letter_id="T">-681</value>
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<alphabet_array>
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<value letter_id="C">-668</value>
<value letter_id="G">-827</value>
<value letter_id="T">223</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-67</value>
<value letter_id="G">-827</value>
<value letter_id="T">195</value>
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<alphabet_array>
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<value letter_id="C">-827</value>
<value letter_id="G">143</value>
<value letter_id="T">-364</value>
</alphabet_array>
</alphabet_matrix>
</scores>
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<alphabet_matrix>
<alphabet_array>
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<alphabet_array>
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<value letter_id="G">0.918386</value>
<value letter_id="T">0.022514</value>
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<alphabet_array>
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<alphabet_array>
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<value letter_id="T">0.619137</value>
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<value letter_id="C">0.003752</value>
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<value letter_id="T">0.994371</value>
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<alphabet_array>
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<alphabet_array>
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<alphabet_array>
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<alphabet_array>
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<value letter_id="T">0.035647</value>
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<alphabet_array>
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<value letter_id="C">0.034709</value>
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<value letter_id="T">0.960600</value>
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<alphabet_array>
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<value letter_id="T">0.987805</value>
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<alphabet_array>
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<value letter_id="T">0.814259</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="T">0.016886</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
[GA]GT[TC]TC[AG]C[CT][AC]TGTT[GA]
</regular_expression>
<contributing_sites>
</contributing_sites>
</motif>
<motif id="motif_5" name="TGGTCTYGAACTCCT" alt="MEME-5" width="15" sites="705" ic="23.3" re="23.7" llr="11559" p_value="3.8e-342" e_value="2.0e-131" bayes_threshold="13.3506" elapsed_time="1264.537535">
<scores>
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<alphabet_array>
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<value letter_id="C">-303</value>
<value letter_id="G">-767</value>
<value letter_id="T">219</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-767</value>
<value letter_id="G">165</value>
<value letter_id="T">-1611</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-185</value>
<value letter_id="C">-377</value>
<value letter_id="G">167</value>
<value letter_id="T">-721</value>
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<alphabet_array>
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<value letter_id="C">-212</value>
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<alphabet_array>
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<value letter_id="C">177</value>
<value letter_id="G">-535</value>
<value letter_id="T">-621</value>
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<alphabet_array>
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<value letter_id="C">-767</value>
<value letter_id="G">-667</value>
<value letter_id="T">224</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-563</value>
<value letter_id="C">111</value>
<value letter_id="G">-303</value>
<value letter_id="T">66</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">41</value>
<value letter_id="C">-315</value>
<value letter_id="G">122</value>
<value letter_id="T">-389</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="G">-467</value>
<value letter_id="T">-1611</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">200</value>
<value letter_id="C">-609</value>
<value letter_id="G">-367</value>
<value letter_id="T">-69</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="G">-1611</value>
<value letter_id="T">-196</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-292</value>
<value letter_id="G">-567</value>
<value letter_id="T">218</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="G">-667</value>
<value letter_id="T">-204</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="T">215</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
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<alphabet_array>
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</alphabet_array>
<alphabet_array>
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<alphabet_array>
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</alphabet_array>
<alphabet_array>
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<value letter_id="C">0.934752</value>
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</alphabet_array>
<alphabet_array>
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<alphabet_array>
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<value letter_id="C">0.931915</value>
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<value letter_id="T">0.055319</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">0.066667</value>
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</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
TGGTCT[CT][GA]AACTCCT
</regular_expression>
<contributing_sites>
</contributing_sites>
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<regular_expression>
[GA]CCACC[AG][CT][GA]CC[CT][GA]GC
</regular_expression>
<contributing_sites>
</contributing_sites>
</motif>
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<value letter_id="G">-1648</value>
<value letter_id="T">-5</value>
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<alphabet_array>
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<regular_expression>
[AT]G[GA]AT[CT][AG]C[TC]TGA[GA][CG][CT]
</regular_expression>
<contributing_sites>
</contributing_sites>
</motif>
<motif id="motif_8" name="GCTGGAGTGCAGTGG" alt="MEME-8" width="15" sites="442" ic="25.5" re="24.8" llr="7604" p_value="1.8e-203" e_value="3.5e-064" bayes_threshold="13.6057" elapsed_time="1951.406865">
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<alphabet_array>
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<alphabet_array>
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<regular_expression>
GCTGGAGTGCAGTGG
</regular_expression>
<contributing_sites>
</contributing_sites>
</motif>
<motif id="motif_9" name="YGATCTCRGCTCACT" alt="MEME-9" width="15" sites="449" ic="22.9" re="23.1" llr="7196" p_value="1.8e-147" e_value="2.6e-034" bayes_threshold="14.05" elapsed_time="2177.856050">
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<regular_expression>
[CT][GA]ATCT[CT][GA]GCTCACT
</regular_expression>
<contributing_sites>
</contributing_sites>
</motif>
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<regular_expression>
C[TC][AG]TCT[CT][TA]A[CA][AT]AAAA
</regular_expression>
<contributing_sites>
</contributing_sites>
</motif>
</motifs>
</MEME>
