******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.4.1 (Release date: Sat Aug 21 19:23:23 2021 -0700) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/seqs-centered CONTROL SEQUENCES= --none-- ALPHABET= ACGT ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/seqs-centered -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 15 -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + - width: minw= 6 maxw= 15 nsites: minsites= 2 maxsites= 20237 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 2023700 N= 20237 sample: seed= 0 hsfrac= 0 searchsize= 100000 norand= no csites= 1000 Letter frequencies in dataset: A 0.214 C 0.286 G 0.286 T 0.214 Background letter frequencies (from file /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d6_BCG_TRIM1_7_peaks/background): A 0.21 C 0.29 G 0.29 T 0.21 Background model order: 2 ******************************************************************************** ******************************************************************************** MOTIF WAAAAAWAMAAAAAW MEME-1 width = 15 sites = 2720 llr = 34447 E-value = 5.5e-317 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAAAAAWAMAAAAAW MEME-1 Description -------------------------------------------------------------------------------- Simplified A 489889493999785 pos.-specific C 1111111:51::11: probability G ::::::::1:::111 matrix T 51:11:512:11114 bits 2.2 2.0 1.8 * * * 1.6 * * * ** Relative 1.3 **** * *** Entropy 1.1 ***** * *** * (18.3 bits) 0.9 ******* ***** 0.7 ******** ****** 0.4 ******** ****** 0.2 *************** 0.0 --------------- Multilevel TAAAAATACAAAAAA consensus A A A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAAAAWAMAAAAAW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 1740382 bayes= 11.6095 E= 5.5e-317 83 -109 -645 121 187 -181 -311 -87 206 -160 -630 -309 201 -220 -334 -175 197 -165 -730 -132 215 -231 -604 -570 104 -222 -862 126 212 -804 -553 -143 32 71 -154 -38 216 -231 -662 -757 205 -285 -332 -180 202 -304 -341 -133 181 -157 -240 -91 185 -237 -240 -70 117 -323 -187 98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAAAAWAMAAAAAW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 2720 E= 5.5e-317 0.373162 0.136029 0.003309 0.487500 0.769118 0.082721 0.033456 0.114706 0.876103 0.095588 0.003676 0.024632 0.845588 0.063235 0.028676 0.062500 0.821691 0.092279 0.001838 0.084191 0.933088 0.058456 0.004412 0.004044 0.431985 0.062132 0.000735 0.505147 0.914706 0.001103 0.006250 0.077941 0.263235 0.475000 0.099632 0.162132 0.937500 0.058456 0.002941 0.001103 0.870588 0.040074 0.029044 0.060294 0.854044 0.035294 0.027206 0.083456 0.736029 0.097426 0.054779 0.111765 0.759926 0.055882 0.054779 0.129412 0.473897 0.030882 0.079044 0.416176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAAAAWAMAAAAAW MEME-1 regular expression -------------------------------------------------------------------------------- [TA]AAAAA[TA]A[CA]AAAAA[AT] -------------------------------------------------------------------------------- Time 307.23 secs. ******************************************************************************** ******************************************************************************** MOTIF RARKWGCTGGGATTA MEME-2 width = 15 sites = 1116 llr = 17504 E-value = 2.9e-208 ******************************************************************************** -------------------------------------------------------------------------------- Motif RARKWGCTGGGATTA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6a5:5:::11:a::a pos.-specific C ::::::9:::::2:: probability G 4:55:a::999:::: matrix T :::55:1a::::8a: bits 2.2 2.0 * * * ** 1.8 * * * ** 1.6 * *** ** ** Relative 1.3 * ********** Entropy 1.1 * *********** (22.6 bits) 0.9 *************** 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel AAGTAGCTGGGATTA consensus G AGT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARKWGCTGGGATTA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 1740382 bayes= 12.9081 E= 2.9e-208 155 -553 29 -312 223 -425 -1677 -787 124 -675 79 -1677 -1677 -369 73 124 128 -517 -534 117 -302 -833 173 -397 -787 171 -1677 -202 -429 -417 -1677 221 -175 -634 169 -787 -168 -501 166 -441 -212 -733 171 -1677 221 -634 -353 -1677 -1677 -27 -534 184 -1677 -272 -733 218 219 -434 -358 -1677 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARKWGCTGGGATTA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 1116 E= 2.9e-208 0.616487 0.006272 0.353047 0.024194 0.983871 0.015233 0.000000 0.000896 0.496416 0.002688 0.500896 0.000000 0.000000 0.022401 0.479391 0.498208 0.511649 0.008065 0.007168 0.473118 0.025986 0.000896 0.959677 0.013441 0.000896 0.947133 0.000000 0.051971 0.010753 0.016129 0.000000 0.973118 0.062724 0.003584 0.932796 0.000896 0.065412 0.008961 0.915771 0.009857 0.048387 0.001792 0.949821 0.000000 0.971326 0.003584 0.025090 0.000000 0.000000 0.240143 0.007168 0.752688 0.000000 0.043907 0.001792 0.954301 0.961470 0.014337 0.024194 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARKWGCTGGGATTA MEME-2 regular expression -------------------------------------------------------------------------------- [AG]A[GA][TG][AT]GCTGGGA[TC]TA -------------------------------------------------------------------------------- Time 552.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGGCBGAGGCRGG MEME-3 width = 15 sites = 2918 llr = 30853 E-value = 2.2e-187 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGGCBGAGGCRGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:8:::117:::311 pos.-specific C 1:2::83:2::7112 probability G 99:9913919a1587 matrix T :::::14::::21:: bits 2.2 2.0 1.8 1.6 * Relative 1.3 **** ** Entropy 1.1 ***** * ** (15.3 bits) 0.9 ****** * ** * 0.7 ****** ***** ** 0.4 ****** ******** 0.2 *************** 0.0 --------------- Multilevel GGAGGCTGAGGCGGG consensus C C C TA C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGCBGAGGCRGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 1740382 bayes= 11.3083 E= 2.2e-187 -202 -234 162 -1815 -211 -379 166 -401 186 -41 -405 -1815 -231 -340 167 -480 -257 -366 169 -445 -417 155 -210 -153 -190 0 -14 90 -67 -497 157 -1815 164 -39 -158 -294 -275 -317 169 -1815 -365 -1815 174 -405 -274 123 -199 3 72 -212 71 -88 -131 -212 152 -365 -203 -33 131 -1815 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGCBGAGGCRGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 2918 E= 2.2e-187 0.051748 0.057231 0.891021 0.000000 0.048663 0.020905 0.917409 0.013023 0.763879 0.218643 0.017478 0.000000 0.042495 0.027416 0.922550 0.007539 0.035298 0.022961 0.932145 0.009596 0.011652 0.847841 0.067512 0.072995 0.056203 0.289925 0.262509 0.391364 0.132282 0.009253 0.858465 0.000000 0.654558 0.221042 0.096984 0.027416 0.031186 0.032214 0.936600 0.000000 0.016792 0.000000 0.970528 0.012680 0.031528 0.680946 0.072995 0.214531 0.345442 0.066827 0.473269 0.114462 0.084990 0.066484 0.831734 0.016792 0.051405 0.229952 0.718643 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGCBGAGGCRGG MEME-3 regular expression -------------------------------------------------------------------------------- GG[AC]GGC[TCG]G[AC]GG[CT][GA]G[GC] -------------------------------------------------------------------------------- Time 794.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTYTCACYATGTTG MEME-4 width = 15 sites = 1066 llr = 15161 E-value = 2.3e-146 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTYTCACYATGTTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 31::::7::6:1::2 pos.-specific C :::4:8:953:::2: probability G 79::::3::1:9::8 matrix T ::a6a2::4:a:a8: bits 2.2 * * * 2.0 * * * * 1.8 * * * * 1.6 * * * * Relative 1.3 ** * * * ** Entropy 1.1 ***** * ***** (20.5 bits) 0.9 ********* ***** 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel GGTTTCACCATGTTG consensus A C G TC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTYTCACYATGTTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 1740382 bayes= 12.9106 E= 2.3e-146 29 -495 132 -464 -203 -527 166 -322 -781 -668 -827 224 -781 39 -827 156 -1670 -627 -727 224 -1670 149 -827 -17 167 -327 -4 -349 -311 169 -827 -228 -500 92 -595 106 146 -10 -133 -256 -581 -306 -827 219 -124 -346 161 -681 -464 -668 -827 223 -622 -67 -827 195 -5 -827 143 -364 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTYTCACYATGTTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 1066 E= 2.3e-146 0.257974 0.009381 0.724203 0.008443 0.051595 0.007505 0.918386 0.022514 0.000938 0.002814 0.000938 0.995310 0.000938 0.378987 0.000938 0.619137 0.000000 0.003752 0.001876 0.994371 0.000000 0.812383 0.000938 0.186679 0.668856 0.030019 0.282364 0.018762 0.024390 0.931520 0.000938 0.043152 0.006567 0.548780 0.004690 0.439962 0.577861 0.271107 0.115385 0.035647 0.003752 0.034709 0.000938 0.960600 0.089118 0.026266 0.882739 0.001876 0.008443 0.002814 0.000938 0.987805 0.002814 0.181989 0.000938 0.814259 0.203565 0.000938 0.778612 0.016886 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTYTCACYATGTTG MEME-4 regular expression -------------------------------------------------------------------------------- [GA]GT[TC]TC[AG]C[CT][AC]TGTT[GA] -------------------------------------------------------------------------------- Time 1031.07 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGTCTYGAACTCCT MEME-5 width = 15 sites = 705 llr = 11559 E-value = 2.0e-131 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGTCTYGAACTCCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :11::::3a8::::: pos.-specific C :::1a:6:::9:991 probability G :99::::7::::::: matrix T a::9:a3::11a119 bits 2.2 * * 2.0 * * * * 1.8 * * * * * * 1.6 * *** ** * * Relative 1.3 ****** ******* Entropy 1.1 ****** ******* (23.7 bits) 0.9 ******* ******* 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel TGGTCTCGAACTCCT consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTCTYGAACTCCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 1740382 bayes= 13.3506 E= 2.0e-131 -721 -303 -767 219 -119 -767 165 -1611 -185 -377 167 -721 -721 -212 -1611 215 -721 177 -535 -621 -721 -767 -667 224 -563 111 -303 66 41 -315 122 -389 223 -1611 -467 -1611 200 -609 -367 -69 -421 169 -1611 -196 -621 -292 -567 218 -521 170 -667 -204 -721 169 -467 -193 -721 -212 -1611 215 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTCTYGAACTCCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 705 E= 2.0e-131 0.001418 0.035461 0.001418 0.961702 0.092199 0.001418 0.906383 0.000000 0.058156 0.021277 0.919149 0.001418 0.001418 0.066667 0.000000 0.931915 0.001418 0.988652 0.007092 0.002837 0.001418 0.001418 0.002837 0.994326 0.004255 0.626950 0.035461 0.333333 0.279433 0.032624 0.673759 0.014184 0.988652 0.000000 0.011348 0.000000 0.842553 0.004255 0.022695 0.130496 0.011348 0.934752 0.000000 0.053901 0.002837 0.038298 0.005674 0.953191 0.005674 0.940426 0.002837 0.051064 0.001418 0.931915 0.011348 0.055319 0.001418 0.066667 0.000000 0.931915 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTCTYGAACTCCT MEME-5 regular expression -------------------------------------------------------------------------------- TGGTCT[CT][GA]AACTCCT -------------------------------------------------------------------------------- Time 1264.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCACCAYGCCYRGC MEME-6 width = 15 sites = 1148 llr = 15374 E-value = 6.0e-132 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCACCAYGCCYRGC MEME-6 Description -------------------------------------------------------------------------------- Simplified A 2::a::7:3:::4:: pos.-specific C :aa:98:6:a96::9 probability G 8:::::3:7:::6a: matrix T :::::2:4::13::: bits 2.2 2.0 * 1.8 * 1.6 *** * * Relative 1.3 **** ** ** Entropy 1.1 ******* ** ** (19.3 bits) 0.9 *************** 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel GCCACCACGCCCGGC consensus A GTA TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACCAYGCCYRGC MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 1740382 bayes= 12.3557 E= 6.0e-132 -6 -638 146 -1681 -433 174 -1681 -321 -459 173 -837 -271 221 -521 -385 -1681 -559 170 -479 -216 -1681 152 -1681 -30 175 -1681 -9 -352 -383 101 -579 92 37 -438 125 -316 -475 173 -538 -327 -433 169 -679 -201 -359 115 -638 67 89 -1681 103 -367 -333 -538 174 -511 -321 169 -429 -283 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACCAYGCCYRGC MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 1148 E= 6.0e-132 0.201220 0.003484 0.795296 0.000000 0.010453 0.966899 0.000000 0.022648 0.008711 0.958188 0.000871 0.032230 0.972125 0.007840 0.020035 0.000000 0.004355 0.938153 0.010453 0.047038 0.000000 0.829268 0.000000 0.170732 0.709059 0.000000 0.272648 0.018293 0.014808 0.581882 0.005226 0.398084 0.272648 0.013937 0.689895 0.023519 0.007840 0.963415 0.006969 0.021777 0.010453 0.934669 0.002613 0.052265 0.017422 0.644599 0.003484 0.334495 0.390244 0.000000 0.593206 0.016551 0.020906 0.006969 0.966028 0.006098 0.022648 0.932927 0.014808 0.029617 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACCAYGCCYRGC MEME-6 regular expression -------------------------------------------------------------------------------- [GA]CCACC[AG][CT][GA]CC[CT][GA]GC -------------------------------------------------------------------------------- Time 1496.16 secs. ******************************************************************************** ******************************************************************************** MOTIF AGRATCRCTTGARSY MEME-7 width = 15 sites = 913 llr = 12500 E-value = 3.5e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRATCRCTTGARSY MEME-7 Description -------------------------------------------------------------------------------- Simplified A 624a::6::::a4:: pos.-specific C 2::::7:93::::56 probability G :86:::4:::a:63: matrix T 2:::a2:17a:::14 bits 2.2 * 2.0 ** * * 1.8 ** *** 1.6 ** * *** Relative 1.3 ** ***** Entropy 1.1 * ** ***** (19.8 bits) 0.9 ************* * 0.7 ************* * 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel AGGATCACTTGAGCC consensus T A TG C AGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRATCRCTTGARSY MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 1740382 bayes= 13.1932 E= 3.5e-080 153 -63 -1648 -5 -46 -1648 151 -334 97 -646 101 -758 219 -1648 -296 -1648 -1648 -314 -1648 220 -341 130 -388 23 141 -324 50 -1648 -1648 171 -1648 -194 -1648 -20 -705 182 -500 -1648 -1648 224 -1648 -1648 179 -1648 222 -1648 -424 -478 97 -488 99 -758 -254 92 27 -165 -1648 109 -546 84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRATCRCTTGARSY MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 913 E= 3.5e-080 0.608981 0.187295 0.000000 0.203724 0.153341 0.000000 0.825849 0.020811 0.411829 0.003286 0.583790 0.001095 0.962760 0.000000 0.037240 0.000000 0.000000 0.032859 0.000000 0.967141 0.019715 0.714129 0.019715 0.246440 0.560789 0.030668 0.408543 0.000000 0.000000 0.945235 0.000000 0.054765 0.000000 0.253012 0.002191 0.744797 0.006572 0.000000 0.000000 0.993428 0.000000 0.000000 1.000000 0.000000 0.976999 0.000000 0.015334 0.007667 0.411829 0.009858 0.577218 0.001095 0.036145 0.547645 0.349398 0.066813 0.000000 0.617744 0.006572 0.375685 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRATCRCTTGARSY MEME-7 regular expression -------------------------------------------------------------------------------- [AT]G[GA]AT[CT][AG]C[TC]TGA[GA][CG][CT] -------------------------------------------------------------------------------- Time 1724.45 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGGAGTGCAGTGG MEME-8 width = 15 sites = 442 llr = 7604 E-value = 3.5e-064 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGGAGTGCAGTGG MEME-8 Description -------------------------------------------------------------------------------- Simplified A :::1:a::1:a1::: pos.-specific C :9:::::::9::::: probability G a::9a:a:9::8:aa matrix T :1a::::a::::a:: bits 2.2 * 2.0 * * * * 1.8 * * * * ** 1.6 * ******* * *** Relative 1.3 * ********* *** Entropy 1.1 *************** (24.8 bits) 0.9 *************** 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel GCTGGAGTGCAGTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGAGTGCAGTGG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 1740382 bayes= 13.6057 E= 3.5e-064 -215 -1543 172 -1543 -422 163 -300 -195 -395 -1543 -354 219 -201 -700 171 -1543 -654 -383 174 -454 220 -1543 -300 -1543 -229 -1543 172 -1543 -354 -419 -419 218 -178 -1543 170 -1543 -1543 170 -268 -395 225 -1543 -1543 -1543 -52 -441 152 -454 -1543 -342 -1543 221 -554 -1543 178 -1543 -554 -1543 174 -308 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGAGTGCAGTGG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 442 E= 3.5e-064 0.047511 0.000000 0.952489 0.000000 0.011312 0.898190 0.036199 0.054299 0.013575 0.000000 0.024887 0.961538 0.052036 0.002262 0.945701 0.000000 0.002262 0.020362 0.968326 0.009050 0.963801 0.000000 0.036199 0.000000 0.042986 0.000000 0.957014 0.000000 0.018100 0.015837 0.015837 0.950226 0.061086 0.000000 0.938914 0.000000 0.000000 0.941176 0.045249 0.013575 1.000000 0.000000 0.000000 0.000000 0.147059 0.013575 0.830317 0.009050 0.000000 0.027149 0.000000 0.972851 0.004525 0.000000 0.995475 0.000000 0.004525 0.000000 0.970588 0.024887 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGAGTGCAGTGG MEME-8 regular expression -------------------------------------------------------------------------------- GCTGGAGTGCAGTGG -------------------------------------------------------------------------------- Time 1951.41 secs. ******************************************************************************** ******************************************************************************** MOTIF YGATCTCRGCTCACT MEME-9 width = 15 sites = 449 llr = 7196 E-value = 2.6e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGATCTCRGCTCACT MEME-9 Description -------------------------------------------------------------------------------- Simplified A :39::1:3::::a:: pos.-specific C 61::a:7::a:a:a: probability G :61::::69:::::: matrix T 3::a:93:::a:::9 bits 2.2 * 2.0 * * * 1.8 *** * *** 1.6 **** ******* Relative 1.3 **** ******* Entropy 1.1 **** ******* (23.1 bits) 0.9 * ***** ******* 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CGATCTCGGCTCACT consensus TA TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATCTCRGCTCACT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 1740382 bayes= 14.05 E= 2.6e-034 -324 111 -544 72 49 -238 111 -324 216 -1545 -232 -1545 -1545 -1545 -702 225 -1545 178 -702 -656 -61 -702 -602 202 -556 123 -1545 59 69 -444 107 -239 -210 -1545 171 -656 -398 174 -1545 -356 -656 -402 -1545 222 -556 177 -702 -556 221 -370 -702 -1545 -1545 178 -702 -556 -1545 -256 -402 215 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATCTCRGCTCACT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 449 E= 2.6e-034 0.022272 0.625835 0.006682 0.345212 0.296214 0.055679 0.625835 0.022272 0.942094 0.000000 0.057906 0.000000 0.000000 0.000000 0.002227 0.997773 0.000000 0.995546 0.002227 0.002227 0.138085 0.002227 0.004454 0.855234 0.004454 0.679287 0.000000 0.316258 0.338530 0.013363 0.608018 0.040089 0.048998 0.000000 0.948775 0.002227 0.013363 0.968820 0.000000 0.017817 0.002227 0.017817 0.000000 0.979955 0.004454 0.988864 0.002227 0.004454 0.975501 0.022272 0.002227 0.000000 0.000000 0.993318 0.002227 0.004454 0.000000 0.048998 0.017817 0.933185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATCTCRGCTCACT MEME-9 regular expression -------------------------------------------------------------------------------- [CT][GA]ATCT[CT][GA]GCTCACT -------------------------------------------------------------------------------- Time 2177.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CYRTCTCTAMWAAAA MEME-10 width = 15 sites = 351 llr = 4336 E-value = 1.5e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYRTCTCTAMWAAAA MEME-10 Description -------------------------------------------------------------------------------- Simplified A :15:11:38468899 pos.-specific C 74::8:71:51::1: probability G ::5:1::111:11:1 matrix T 25:a:9261:31::: bits 2.2 * 2.0 * 1.8 * * * 1.6 * * ** Relative 1.3 * * * **** Entropy 1.1 **** * **** (17.8 bits) 0.9 **** * ***** 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CTATCTCTACAAAAA consensus CG TA AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRTCTCTAMWAAAA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 1740382 bayes= 14.3559 E= 1.5e-017 -230 132 -286 -10 -125 47 -1510 128 129 -1510 75 -1510 -1510 -1510 -1510 225 -121 154 -208 -1510 -100 -1510 -1510 209 -212 126 -367 15 38 -146 -250 144 192 -1510 -158 -96 105 65 -142 -1510 145 -181 -1510 71 196 -1510 -150 -140 196 -258 -111 -1510 203 -105 -1510 -1510 215 -1510 -214 -1510 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRTCTCTAMWAAAA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 351 E= 1.5e-017 0.042735 0.720798 0.039886 0.196581 0.088319 0.401709 0.000000 0.509972 0.512821 0.000000 0.487179 0.000000 0.000000 0.000000 0.000000 1.000000 0.091168 0.840456 0.068376 0.000000 0.105413 0.000000 0.000000 0.894587 0.048433 0.695157 0.022792 0.233618 0.273504 0.105413 0.051282 0.569801 0.794872 0.000000 0.096866 0.108262 0.435897 0.455840 0.108262 0.000000 0.572650 0.082621 0.000000 0.344729 0.817664 0.000000 0.102564 0.079772 0.817664 0.048433 0.133903 0.000000 0.860399 0.139601 0.000000 0.000000 0.934473 0.000000 0.065527 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRTCTCTAMWAAAA MEME-10 regular expression -------------------------------------------------------------------------------- C[TC][AG]TCT[CT][TA]A[CA][AT]AAAA -------------------------------------------------------------------------------- Time 2404.22 secs. ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: cn45 ********************************************************************************