******************************************************************************** STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation ******************************************************************************** MEME version 5.4.1 (Release date: Sat Aug 21 19:23:23 2021 -0700) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey, "STREME: accurate and versatile sequence motif discovery", Bioinformatics, Mar. 24, 2021. ******************************************************************************** ALPHABET= ACGT strands: + - Background letter frequencies A 0.201 C 0.299 G 0.299 T 0.201 MOTIF 1-CTGGGATTACAGGCR STREME-1 letter-probability matrix: alength= 4 w= 15 nsites= 987 E= 6.1e-031 0.012562 0.931543 0.009161 0.046734 0.013701 0.018273 0.001188 0.966838 0.071793 0.002327 0.922430 0.003450 0.056987 0.002327 0.933819 0.006867 0.059265 0.001188 0.933819 0.005728 0.978228 0.000049 0.018273 0.003450 0.005728 0.252992 0.004605 0.736675 0.003450 0.031941 0.005744 0.958864 0.958865 0.005744 0.033080 0.002311 0.008006 0.903063 0.010300 0.078631 0.977089 0.009161 0.006883 0.006867 0.049011 0.004605 0.937239 0.009145 0.046733 0.005744 0.939517 0.008006 0.013701 0.704697 0.008022 0.273579 0.348898 0.021692 0.604317 0.025093 MOTIF 2-CCTCAGCCTCCCRAR STREME-2 letter-probability matrix: alength= 4 w= 15 nsites= 1003 E= 4.0e-026 0.000037 0.975910 0.000054 0.023999 0.000037 0.962775 0.003838 0.033351 0.002559 0.002577 0.001839 0.993026 0.006342 0.873612 0.003838 0.116208 0.657160 0.025282 0.283464 0.034094 0.025260 0.002577 0.960777 0.011387 0.011387 0.960533 0.006360 0.021720 0.001298 0.962036 0.003838 0.032828 0.006342 0.012666 0.000054 0.980938 0.002559 0.963297 0.007621 0.026522 0.005081 0.963299 0.000054 0.031565 0.027783 0.795209 0.011405 0.165603 0.638140 0.016973 0.320887 0.024000 0.911564 0.012666 0.069428 0.006342 0.486680 0.006360 0.505662 0.001298 MOTIF 3-CCAGCCTGGSCAACA STREME-3 letter-probability matrix: alength= 4 w= 15 nsites= 843 E= 3.7e-025 0.006524 0.937595 0.016921 0.038959 0.002632 0.950566 0.000056 0.046746 0.992067 0.001353 0.006543 0.000038 0.027282 0.013029 0.854521 0.105168 0.019498 0.944081 0.003948 0.032473 0.011714 0.950570 0.002651 0.035066 0.009119 0.007840 0.000056 0.982985 0.035066 0.000056 0.957056 0.007822 0.103868 0.006543 0.880470 0.009119 0.029878 0.428599 0.524619 0.016904 0.019498 0.753236 0.011733 0.215533 0.738947 0.010435 0.245391 0.005227 0.971308 0.000056 0.023409 0.005227 0.009119 0.911643 0.011732 0.067506 0.960930 0.009138 0.026003 0.003930 MOTIF 4-RGYGCRGTGGCKCR STREME-4 letter-probability matrix: alength= 4 w= 14 nsites= 717 E= 4.7e-020 0.506698 0.006485 0.481958 0.004858 0.035334 0.000069 0.964551 0.000047 0.000047 0.337567 0.000069 0.662318 0.194041 0.000069 0.805843 0.000047 0.000047 0.781108 0.003277 0.215569 0.643083 0.001673 0.355197 0.000047 0.081850 0.000069 0.918034 0.000047 0.000047 0.003277 0.000069 0.996607 0.016086 0.000069 0.980590 0.003254 0.012878 0.000069 0.972571 0.014482 0.009670 0.790631 0.003277 0.196422 0.192404 0.003277 0.336015 0.468303 0.009670 0.789027 0.014505 0.186798 0.616695 0.037627 0.324780 0.020898 MOTIF 5-AAATTAGCYRGGCRT STREME-5 letter-probability matrix: alength= 4 w= 15 nsites= 513 E= 1.8e-016 0.971192 0.013274 0.011077 0.004457 0.966798 0.004488 0.008881 0.019833 0.936046 0.008881 0.028650 0.026423 0.022029 0.026453 0.013274 0.938243 0.004457 0.017667 0.006684 0.971192 0.986567 0.000095 0.013274 0.000064 0.013243 0.006684 0.969026 0.011047 0.013243 0.933880 0.004488 0.048389 0.011047 0.591101 0.000095 0.397757 0.338408 0.011078 0.617502 0.033013 0.028619 0.006684 0.955846 0.008850 0.074748 0.004488 0.911915 0.008850 0.019833 0.711968 0.000095 0.268105 0.373563 0.022061 0.586739 0.017636 0.002260 0.055009 0.002291 0.940440 MOTIF 6-GTCTCTACWAAAAA STREME-6 letter-probability matrix: alength= 4 w= 14 nsites= 717 E= 3.8e-016 0.296989 0.001569 0.695382 0.006060 0.004556 0.016612 0.004577 0.974254 0.006060 0.974276 0.004577 0.015086 0.000044 0.005202 0.000065 0.994690 0.003052 0.951968 0.021125 0.023856 0.237858 0.021748 0.003073 0.737321 0.992306 0.003073 0.000065 0.004556 0.256533 0.702744 0.004577 0.036145 0.369993 0.036793 0.000065 0.593149 0.968723 0.007101 0.018116 0.006060 0.975759 0.019620 0.003073 0.001548 0.953194 0.018116 0.004577 0.024113 0.956205 0.015107 0.003073 0.025616 0.923991 0.016611 0.018739 0.040659 MOTIF 7-GGGGTTTCACCA STREME-7 letter-probability matrix: alength= 4 w= 12 nsites= 435 E= 1.3e-014 0.226216 0.002823 0.756228 0.014733 0.042055 0.005529 0.941512 0.010904 0.030442 0.010941 0.939594 0.019022 0.036385 0.007776 0.947642 0.008197 0.000079 0.005529 0.000117 0.994276 0.000079 0.002823 0.002823 0.994276 0.005491 0.000117 0.000117 0.994276 0.000079 0.921221 0.000117 0.078584 0.788536 0.002823 0.146303 0.062338 0.005491 0.983237 0.005781 0.005491 0.000079 0.948304 0.000117 0.051501 0.878080 0.007364 0.100946 0.013610 MOTIF 8-AACTCCTGACCTCAR STREME-8 letter-probability matrix: alength= 4 w= 15 nsites= 556 E= 2.6e-014 0.989840 0.002072 0.002072 0.006016 0.784405 0.063652 0.024745 0.127199 0.006016 0.952768 0.000086 0.041130 0.011975 0.015976 0.006044 0.966005 0.004030 0.956102 0.004058 0.035810 0.004030 0.958088 0.004058 0.033824 0.002044 0.059678 0.002072 0.936206 0.053688 0.004058 0.938224 0.004030 0.662657 0.004058 0.327269 0.006016 0.047729 0.697819 0.236518 0.017934 0.006016 0.900480 0.013989 0.079514 0.008003 0.010017 0.002072 0.979909 0.009989 0.916371 0.002072 0.071569 0.836873 0.000086 0.157025 0.006016 0.493007 0.008031 0.300250 0.198712 MOTIF 9-ATCTCGGCTCACTGC STREME-9 letter-probability matrix: alength= 4 w= 15 nsites= 388 E= 1.5e-011 0.931452 0.000123 0.068343 0.000083 0.011452 0.028547 0.008650 0.951350 0.005767 0.965603 0.000123 0.028507 0.145053 0.011492 0.004145 0.839310 0.011452 0.667053 0.002965 0.318530 0.302714 0.014335 0.657286 0.025665 0.028508 0.008650 0.959917 0.002925 0.008610 0.954233 0.008650 0.028507 0.000083 0.011492 0.000123 0.988302 0.002925 0.974130 0.000123 0.022822 0.985460 0.000123 0.014335 0.000083 0.002925 0.957075 0.002965 0.037035 0.005767 0.085400 0.005807 0.903025 0.085358 0.008650 0.888855 0.017137 0.014295 0.954232 0.000123 0.031350 MOTIF 10-TTCAAGCGATTCTCC STREME-10 letter-probability matrix: alength= 4 w= 15 nsites= 382 E= 8.3e-011 0.003097 0.180706 0.000130 0.816068 0.000087 0.024205 0.000130 0.975577 0.003097 0.972610 0.012168 0.012125 0.954511 0.027215 0.009158 0.009116 0.882265 0.075384 0.033235 0.009116 0.045230 0.003139 0.951544 0.000087 0.030185 0.650453 0.033234 0.286128 0.243947 0.117519 0.632428 0.006106 0.996644 0.003139 0.000130 0.000087 0.000087 0.006149 0.009158 0.984606 0.009116 0.153619 0.003139 0.834126 0.003097 0.966591 0.003139 0.027173 0.003097 0.015177 0.006149 0.975577 0.000087 0.915430 0.009158 0.075325 0.051249 0.879314 0.039253 0.030183 MOTIF 11-RGGHGGATCAC STREME-11 letter-probability matrix: alength= 4 w= 11 nsites= 343 E= 1.8e-006 0.337828 0.000172 0.645931 0.016068 0.036986 0.000172 0.953095 0.009747 0.042153 0.000172 0.957560 0.000116 0.241497 0.314881 0.020113 0.423510 0.233605 0.000172 0.766107 0.000116 0.083871 0.000172 0.915841 0.000116 0.983588 0.000172 0.000172 0.016068 0.000116 0.000172 0.000172 0.999540 0.000116 0.999597 0.000172 0.000116 0.906671 0.000172 0.093042 0.000116 0.000116 0.956405 0.000172 0.043307 MOTIF 12-CCCCRCCCCG STREME-12 letter-probability matrix: alength= 4 w= 10 nsites= 2188 E= 1.6e-005 0.005240 0.979919 0.002741 0.012100 0.049755 0.926178 0.001400 0.022668 0.000067 0.973296 0.017619 0.009019 0.045462 0.791467 0.092116 0.070956 0.618510 0.000099 0.381324 0.000067 0.084712 0.781157 0.086461 0.047670 0.000067 0.960153 0.033757 0.006024 0.010303 0.926770 0.002773 0.060155 0.004306 0.859917 0.012670 0.123108 0.100550 0.205332 0.666201 0.027917 MOTIF 13-GAGCRAGACTCY STREME-13 letter-probability matrix: alength= 4 w= 12 nsites= 283 E= 1.6e-004 0.040490 0.024398 0.842133 0.092979 0.999535 0.000174 0.000174 0.000117 0.032415 0.000174 0.951144 0.016266 0.020305 0.665635 0.000174 0.313886 0.339187 0.005887 0.654809 0.000117 0.999535 0.000174 0.000174 0.000117 0.134908 0.012286 0.852689 0.000117 0.999535 0.000174 0.000174 0.000117 0.000117 0.991517 0.000174 0.008192 0.000117 0.238403 0.016323 0.745157 0.024341 0.933319 0.013961 0.028379 0.023041 0.384666 0.012286 0.580007 MOTIF 14-AACCTCCRCCTCCCR STREME-14 letter-probability matrix: alength= 4 w= 15 nsites= 180 E= 2.0e-002 0.945925 0.000256 0.053647 0.000172 0.963723 0.006188 0.029917 0.000172 0.041698 0.673110 0.190102 0.095090 0.017969 0.940077 0.000256 0.041698 0.000172 0.012120 0.000256 0.987452 0.000172 0.963806 0.012120 0.023902 0.000172 0.756174 0.006188 0.237466 0.344267 0.000256 0.637509 0.017969 0.053563 0.857022 0.012121 0.077295 0.006104 0.951942 0.000256 0.041698 0.017969 0.006188 0.000256 0.975587 0.017969 0.951942 0.000256 0.029834 0.006104 0.928212 0.000256 0.065427 0.032296 0.640976 0.023985 0.302743 0.352655 0.023985 0.575729 0.047631 MOTIF 15-ARAGARAGAAAGA STREME-15 letter-probability matrix: alength= 4 w= 13 nsites= 157 E= 3.8e-002 0.903482 0.000348 0.000348 0.095821 0.345747 0.000348 0.653670 0.000235 0.918270 0.032668 0.024588 0.024474 0.038428 0.000348 0.944830 0.016394 0.955316 0.000348 0.044101 0.000235 0.399022 0.091745 0.449086 0.060147 0.963396 0.008428 0.027942 0.000235 0.095411 0.221174 0.683180 0.000235 0.864880 0.024588 0.018064 0.092467 0.751792 0.000348 0.247626 0.000235 0.726792 0.000348 0.193199 0.079661 0.000235 0.000348 0.947350 0.052067 0.990989 0.008428 0.000348 0.000235 MOTIF 16-GCCGCCGCCGCCGC STREME-16 letter-probability matrix: alength= 4 w= 14 nsites= 380 E= 4.8e-002 0.022827 0.081807 0.895265 0.000101 0.020931 0.954778 0.000150 0.024141 0.031353 0.830939 0.048927 0.088781 0.062595 0.000150 0.937154 0.000101 0.020931 0.920094 0.000150 0.058826 0.013989 0.811230 0.100742 0.074039 0.007021 0.024452 0.968426 0.000101 0.001837 0.958336 0.000150 0.039678 0.010223 0.945509 0.000150 0.044118 0.072846 0.002593 0.874193 0.050368 0.017459 0.922629 0.000150 0.059762 0.010517 0.986658 0.000150 0.002675 0.021158 0.000150 0.862710 0.115982 0.003572 0.979414 0.000150 0.016864 MOTIF 17-AATAAATAAATA STREME-17 letter-probability matrix: alength= 4 w= 12 nsites= 95 E= 8.1e-002 0.884611 0.020062 0.028224 0.067102 0.899120 0.028224 0.041160 0.031496 0.001462 0.064258 0.044547 0.889733 0.884612 0.011901 0.070604 0.032883 0.816114 0.057485 0.065645 0.060757 0.914056 0.028224 0.024837 0.032884 0.016560 0.069032 0.093518 0.820890 0.827052 0.036386 0.083968 0.052594 0.861697 0.073807 0.032999 0.031498 0.794833 0.069032 0.075378 0.060756 0.031746 0.126164 0.018247 0.823844 0.901120 0.041160 0.049322 0.008398 MOTIF 18-CAGCCTCCYGAGTAG STREME-18 letter-probability matrix: alength= 4 w= 15 nsites= 39 E= 1.6e-001 0.001154 0.916438 0.041484 0.040924 0.955647 0.001714 0.001714 0.040924 0.040924 0.041484 0.916438 0.001154 0.001154 0.916438 0.041484 0.040924 0.040924 0.956207 0.001714 0.001154 0.001154 0.041484 0.001714 0.955647 0.001154 0.956207 0.041484 0.001154 0.040924 0.956207 0.001714 0.001154 0.080693 0.319876 0.001714 0.597716 0.120469 0.081253 0.717585 0.080693 0.876108 0.041484 0.041484 0.040924 0.040924 0.001714 0.956207 0.001154 0.001154 0.001714 0.001714 0.995417 0.995417 0.001714 0.001714 0.001154 0.080693 0.001714 0.916438 0.001154 MOTIF 19-AGGAAGTG STREME-19 letter-probability matrix: alength= 4 w= 8 nsites= 564 E= 2.0e-001 0.693955 0.258616 0.044803 0.002627 0.011212 0.001011 0.983317 0.004460 0.025676 0.026026 0.908338 0.039960 0.987722 0.011519 0.000438 0.000321 0.982302 0.002908 0.000438 0.014353 0.071607 0.033256 0.872246 0.022891 0.000295 0.094023 0.000438 0.905244 0.013360 0.029094 0.945268 0.012279 MOTIF 20-GGAGTTCGAGA STREME-20 letter-probability matrix: alength= 4 w= 11 nsites= 111 E= 4.0e-001 0.087696 0.022314 0.867830 0.022160 0.004850 0.000471 0.983441 0.011238 0.911368 0.000471 0.044158 0.044004 0.011238 0.033235 0.955210 0.000317 0.237145 0.000471 0.011392 0.750992 0.000317 0.000471 0.011392 0.987820 0.000317 0.881395 0.023331 0.094957 0.294924 0.018798 0.675039 0.011238 0.922290 0.000471 0.033235 0.044004 0.011238 0.000471 0.987974 0.000317 0.928678 0.000471 0.070534 0.000317 MOTIF 21-GCCTCAGTTTCCYCA STREME-21 letter-probability matrix: alength= 4 w= 15 nsites= 149 E= 4.5e-001 0.057734 0.029073 0.898603 0.014590 0.007399 0.912984 0.000310 0.079306 0.021781 0.838093 0.014691 0.125435 0.028971 0.007501 0.021882 0.941646 0.000209 0.891412 0.043454 0.064925 0.891311 0.000310 0.086598 0.021781 0.021781 0.024866 0.938762 0.014590 0.021781 0.144124 0.014691 0.819404 0.014590 0.079408 0.125536 0.780466 0.000209 0.000310 0.043454 0.956027 0.031956 0.866856 0.014691 0.086497 0.014590 0.809331 0.007501 0.168579 0.036162 0.473681 0.007501 0.482656 0.007399 0.780565 0.014691 0.197344 0.582657 0.113047 0.151317 0.152978 MOTIF 22-CCGGGGWC STREME-22 letter-probability matrix: alength= 4 w= 8 nsites= 1965 E= 5.5e-001 0.015835 0.604717 0.201318 0.178131 0.000165 0.795616 0.000246 0.203974 0.000165 0.234791 0.764878 0.000165 0.000165 0.000246 0.930094 0.069495 0.000165 0.081968 0.917701 0.000165 0.000165 0.000246 0.999424 0.000165 0.380042 0.000246 0.000246 0.619467 0.000165 0.999424 0.000246 0.000165 MOTIF 23-AAGATGGCGKC STREME-23 letter-probability matrix: alength= 4 w= 11 nsites= 68 E= 6.5e-001 0.868376 0.006327 0.083463 0.041834 0.805050 0.111087 0.014407 0.069457 0.000401 0.069652 0.901924 0.028023 0.923621 0.020138 0.028218 0.028023 0.014212 0.014407 0.042031 0.929351 0.000401 0.028218 0.970981 0.000401 0.075189 0.042029 0.835216 0.047566 0.055647 0.937624 0.000595 0.006133 0.000401 0.014407 0.970981 0.014212 0.041835 0.014407 0.359899 0.583860 0.000401 0.943358 0.028218 0.028023 MOTIF 24-ACTAAAAATACAA STREME-24 letter-probability matrix: alength= 4 w= 13 nsites= 48 E= 6.5e-001 0.898559 0.050364 0.025712 0.025365 0.074669 0.923553 0.001063 0.000716 0.099322 0.001063 0.025712 0.873903 0.912975 0.001063 0.060597 0.025365 0.947858 0.050364 0.001063 0.000716 0.997159 0.001063 0.001063 0.000716 0.972509 0.001063 0.001063 0.025365 0.947859 0.001063 0.025712 0.025365 0.000716 0.001063 0.001063 0.997159 0.997159 0.001063 0.001063 0.000716 0.000716 0.997506 0.001063 0.000716 0.997159 0.001063 0.001063 0.000716 0.972509 0.001063 0.025712 0.000716 MOTIF 25-ACAAAAATTAGC STREME-25 letter-probability matrix: alength= 4 w= 12 nsites= 59 E= 6.5e-001 0.975335 0.000953 0.000953 0.022758 0.048020 0.906151 0.045187 0.000642 0.953218 0.000953 0.023070 0.022758 0.997451 0.000953 0.000953 0.000642 0.997451 0.000953 0.000953 0.000642 0.908986 0.089419 0.000953 0.000642 0.864749 0.089422 0.045187 0.000642 0.000642 0.000953 0.067303 0.931102 0.044876 0.054369 0.023070 0.877686 0.975335 0.000953 0.000953 0.022758 0.044875 0.000953 0.894299 0.059873 0.022758 0.865061 0.023070 0.089111 MOTIF 26-CGCCGCGTCCCC STREME-26 letter-probability matrix: alength= 4 w= 12 nsites= 450 E= 7.1e-001 0.030288 0.923657 0.030387 0.015668 0.039765 0.077971 0.849044 0.033220 0.014573 0.896222 0.039454 0.049751 0.041674 0.882438 0.057200 0.018689 0.049228 0.030667 0.904438 0.015667 0.013553 0.903480 0.057872 0.025095 0.050816 0.106270 0.776705 0.066209 0.065674 0.081764 0.074004 0.778559 0.034665 0.876529 0.046321 0.042485 0.046701 0.802425 0.096047 0.054828 0.038637 0.782885 0.077479 0.100999 0.043857 0.743006 0.114910 0.098228 MOTIF 27-AAAAAWAAAAACAAA STREME-27 letter-probability matrix: alength= 4 w= 15 nsites= 242 E= 7.3e-001 0.992646 0.000284 0.000284 0.006785 0.900311 0.079432 0.000284 0.019973 0.883841 0.046444 0.000284 0.069430 0.827765 0.171760 0.000284 0.000191 0.972863 0.026661 0.000284 0.000191 0.569990 0.138775 0.000284 0.290950 0.801933 0.105252 0.092624 0.000191 0.832793 0.146949 0.000284 0.019973 0.801416 0.039850 0.033253 0.125481 0.999240 0.000284 0.000284 0.000191 0.983316 0.000284 0.000284 0.016116 0.139052 0.478858 0.154957 0.227133 0.953083 0.000284 0.000284 0.046349 0.999240 0.000284 0.000284 0.000191 0.871752 0.020066 0.000284 0.107898 MOTIF 28-CGAGACCAGCCTGG STREME-28 letter-probability matrix: alength= 4 w= 14 nsites= 108 E= 8.0e-001 0.059956 0.690717 0.060094 0.189233 0.288676 0.040206 0.670829 0.000289 0.988910 0.010373 0.000429 0.000289 0.000289 0.000429 0.998994 0.000289 0.945006 0.054277 0.000429 0.000289 0.059954 0.899552 0.000429 0.040065 0.030121 0.919440 0.010373 0.040066 0.869578 0.000429 0.119760 0.010233 0.050010 0.040205 0.819999 0.089786 0.000289 0.889608 0.020317 0.089786 0.020177 0.839887 0.000429 0.139508 0.059954 0.040205 0.050150 0.849691 0.059954 0.060094 0.859775 0.020177 0.159397 0.050150 0.750388 0.040065 MOTIF 29-CCCGGCTC STREME-29 letter-probability matrix: alength= 4 w= 8 nsites= 402 E= 8.4e-001 0.018291 0.936255 0.027164 0.018291 0.018291 0.936255 0.027164 0.018291 0.018291 0.936255 0.027164 0.018291 0.018291 0.027164 0.936255 0.018291 0.018291 0.027164 0.936255 0.018291 0.018291 0.936255 0.027164 0.018291 0.018291 0.027164 0.027164 0.927382 0.018291 0.936255 0.027164 0.018291 MOTIF 30-CAGCAGCAGCAGCAG STREME-30 letter-probability matrix: alength= 4 w= 15 nsites= 159 E= 1.0e+000 0.037866 0.760702 0.188689 0.012743 0.837049 0.050515 0.099692 0.012743 0.000182 0.037954 0.923998 0.037866 0.106952 0.829789 0.044235 0.019024 0.936470 0.006551 0.050516 0.006463 0.044146 0.006551 0.949120 0.000182 0.044146 0.854912 0.081918 0.019024 0.689990 0.122208 0.159891 0.027911 0.071875 0.000271 0.927672 0.000182 0.006463 0.923998 0.069357 0.000182 0.842262 0.031674 0.075638 0.050427 0.037866 0.107040 0.854912 0.000182 0.094390 0.735582 0.169846 0.000182 0.583219 0.063076 0.259315 0.094390 0.119513 0.099692 0.749210 0.031585 MOTIF 31-CTCCTCCTCCTCCTC STREME-31 letter-probability matrix: alength= 4 w= 15 nsites= 121 E= 1.2e+000 0.080431 0.814733 0.032425 0.072411 0.016272 0.008365 0.017040 0.958322 0.000233 0.983149 0.008366 0.008253 0.000233 0.691105 0.016385 0.292276 0.019601 0.000346 0.001891 0.978163 0.000233 0.870872 0.120642 0.008253 0.016272 0.843482 0.000346 0.139899 0.040332 0.040445 0.032425 0.886799 0.008253 0.792037 0.048465 0.151246 0.016272 0.740588 0.008365 0.234774 0.024292 0.035753 0.035753 0.904201 0.032312 0.795365 0.080544 0.091779 0.032312 0.846812 0.048464 0.072411 0.024292 0.104603 0.054883 0.816222 0.016272 0.907642 0.040445 0.035641 MOTIF 32-CACTTTGGGAGGCC STREME-32 letter-probability matrix: alength= 4 w= 14 nsites= 43 E= 1.3e+000 0.000781 0.997277 0.001160 0.000781 0.996898 0.001160 0.001160 0.000781 0.000781 0.997277 0.001160 0.000781 0.000781 0.028077 0.001160 0.969982 0.000781 0.001160 0.001160 0.996898 0.000781 0.001160 0.028077 0.969982 0.027698 0.001160 0.970361 0.000781 0.000781 0.001160 0.997277 0.000781 0.027698 0.001160 0.970361 0.000781 0.969982 0.028077 0.001160 0.000781 0.027698 0.001160 0.970361 0.000781 0.000781 0.054994 0.943443 0.000781 0.000781 0.943443 0.001160 0.054615 0.054615 0.728077 0.001160 0.216148 MOTIF 33-ACTACAACTCCCA STREME-33 letter-probability matrix: alength= 4 w= 13 nsites= 52 E= 1.3e+000 0.939815 0.029680 0.029680 0.000826 0.029279 0.968668 0.001227 0.000826 0.029279 0.029680 0.001227 0.939815 0.996721 0.001227 0.001227 0.000826 0.000826 0.968668 0.029680 0.000826 0.911361 0.029680 0.058133 0.000826 0.882907 0.001227 0.086586 0.029280 0.029279 0.712588 0.143494 0.114639 0.057732 0.029680 0.001227 0.911361 0.086186 0.797948 0.001227 0.114640 0.000826 0.968668 0.001227 0.029279 0.057732 0.741042 0.029680 0.171545 0.683734 0.001227 0.314214 0.000826 MOTIF 34-CCTGTAATCCC STREME-34 letter-probability matrix: alength= 4 w= 11 nsites= 51 E= 1.3e+000 0.025111 0.924322 0.025455 0.025111 0.000708 0.997531 0.001052 0.000708 0.000708 0.001052 0.001052 0.997188 0.147134 0.001052 0.851106 0.000708 0.000708 0.001052 0.001052 0.997188 0.850757 0.123079 0.001052 0.025111 0.850758 0.001052 0.147482 0.000708 0.000708 0.001052 0.001052 0.997188 0.000708 0.948724 0.001052 0.049516 0.000708 0.924321 0.001052 0.073919 0.147138 0.680268 0.001052 0.171541 MOTIF 35-AATCCCAGCWC STREME-35 letter-probability matrix: alength= 4 w= 11 nsites= 167 E= 1.3e+000 0.906840 0.036285 0.034124 0.022751 0.873763 0.035720 0.056552 0.033965 0.004979 0.000483 0.036285 0.958253 0.000325 0.982999 0.011696 0.004979 0.000325 0.971785 0.000483 0.027406 0.019142 0.919330 0.022909 0.038619 0.937988 0.011696 0.005137 0.045180 0.000325 0.022909 0.976440 0.000325 0.006386 0.959167 0.022909 0.011538 0.348168 0.036285 0.000483 0.615064 0.123682 0.853084 0.011696 0.011538 MOTIF 36-GCCTCGGCCTC STREME-36 letter-probability matrix: alength= 4 w= 11 nsites= 464 E= 1.5e+000 0.122957 0.007989 0.745554 0.123500 0.043594 0.888461 0.037968 0.029978 0.004389 0.898000 0.069006 0.028605 0.051400 0.006548 0.023650 0.918402 0.004389 0.951786 0.003278 0.040547 0.063292 0.027287 0.899255 0.010165 0.113186 0.037128 0.675581 0.174105 0.059108 0.836743 0.049135 0.055015 0.025713 0.826363 0.070824 0.077099 0.025161 0.036375 0.073520 0.864944 0.042093 0.842751 0.041481 0.073675 MOTIF 37-GAGACAGGGTCTC STREME-37 letter-probability matrix: alength= 4 w= 13 nsites= 112 E= 1.5e+000 0.045876 0.023263 0.896372 0.034489 0.918983 0.000491 0.057423 0.023103 0.023103 0.023263 0.930531 0.023103 0.918984 0.046036 0.023263 0.011717 0.034489 0.919144 0.011877 0.034489 0.850664 0.023264 0.091583 0.034489 0.045876 0.034650 0.896372 0.023103 0.144689 0.057423 0.763398 0.034490 0.080035 0.034650 0.828052 0.057262 0.011717 0.034650 0.011877 0.941756 0.023103 0.839439 0.023263 0.114194 0.034489 0.000491 0.046036 0.918983 0.011717 0.850826 0.057422 0.080035 MOTIF 38-AGCTGGGCGTGGTG STREME-38 letter-probability matrix: alength= 4 w= 14 nsites= 74 E= 1.5e+000 0.923938 0.000724 0.058062 0.017277 0.050856 0.000724 0.914353 0.034067 0.017277 0.931143 0.017513 0.034067 0.000487 0.218991 0.000724 0.779798 0.000487 0.034303 0.964722 0.000487 0.034067 0.034303 0.897564 0.034067 0.101226 0.118251 0.780035 0.000487 0.084436 0.729667 0.067882 0.118015 0.218759 0.000724 0.689114 0.091404 0.084436 0.051093 0.000724 0.863748 0.050856 0.000724 0.947933 0.000487 0.017277 0.051093 0.931143 0.000487 0.034067 0.000724 0.000724 0.964486 0.034067 0.051093 0.847194 0.067646 MOTIF 39-CAGCCCCGG STREME-39 letter-probability matrix: alength= 4 w= 9 nsites= 1219 E= 1.8e+000 0.017489 0.949517 0.015452 0.017542 0.974682 0.009417 0.009776 0.006125 0.014448 0.009063 0.881541 0.094948 0.033447 0.902789 0.057297 0.006467 0.006467 0.960843 0.006941 0.025749 0.018867 0.933132 0.019808 0.028192 0.032114 0.774690 0.046411 0.146786 0.083944 0.015049 0.884769 0.016238 0.040626 0.038167 0.896377 0.024830 MOTIF 40-TGCCCAAGGTCACA STREME-40 letter-probability matrix: alength= 4 w= 14 nsites= 46 E= 5.2e+000 0.065641 0.022605 0.022605 0.889149 0.000629 0.044275 0.889455 0.065641 0.000629 0.846113 0.022605 0.130653 0.000629 0.781098 0.000934 0.217338 0.022300 0.911125 0.000934 0.065641 0.889149 0.044275 0.065946 0.000629 0.889149 0.065946 0.022605 0.022300 0.065641 0.000934 0.932796 0.000629 0.043970 0.109287 0.846113 0.000629 0.000629 0.000934 0.022605 0.975832 0.043970 0.911125 0.022605 0.022300 0.932491 0.022605 0.044275 0.000629 0.000629 0.932796 0.022605 0.043970 0.737455 0.195970 0.065946 0.000629 MOTIF 41-CCGGCCCGGCCCG STREME-41 letter-probability matrix: alength= 4 w= 13 nsites= 79 E= 9.5e+000 0.018599 0.754572 0.226305 0.000525 0.000525 0.833815 0.049185 0.116476 0.000525 0.249325 0.586947 0.163203 0.000525 0.000779 0.980097 0.018599 0.000525 0.980097 0.000779 0.018599 0.000525 0.940461 0.058490 0.000525 0.000525 0.943946 0.000779 0.054750 0.000525 0.000779 0.959453 0.039243 0.000525 0.000779 0.998172 0.000525 0.000525 0.907791 0.091160 0.000525 0.000525 0.998172 0.000779 0.000525 0.000525 0.998172 0.000779 0.000525 0.000525 0.000779 0.998172 0.000525 MOTIF 42-CCTCCCTCCCTCCC STREME-42 letter-probability matrix: alength= 4 w= 14 nsites= 140 E= 2.1e+001 0.000253 0.889812 0.092276 0.017659 0.000253 0.859868 0.070001 0.069879 0.008956 0.000375 0.000375 0.990294 0.000253 0.922270 0.021394 0.056084 0.008956 0.872406 0.066166 0.052473 0.026362 0.817830 0.000375 0.155432 0.008956 0.000375 0.000375 0.990294 0.017659 0.884040 0.091830 0.006471 0.000253 0.910410 0.009078 0.080259 0.000253 0.779917 0.010755 0.209075 0.078581 0.000375 0.138149 0.782895 0.000253 0.922242 0.000375 0.077131 0.000253 0.852642 0.000375 0.146731 0.038678 0.766733 0.000375 0.194215 ******************************************************************************** Stopped because 3 consecutive motifs exceeded the p-value threshold (0.05). ******************************************************************************** COMMAND: streme --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out -dna --p /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/seqs-centered --minw 6 --maxw 15 --order 2 ******************************************************************************** CPU: cn45 ******************************************************************************** FINALTIME: 1585.54 seconds ********************************************************************************