Invoking:
  getsize /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.089354
Invoking:
  fasta-most -min 50 < /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.10994
Invoking:
  fasta-center -dna -len 100 < /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta 1> /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.144369
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 2 /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background
Finished invoke:
  name: bg  status: 0  time: 0.079435
Invoking:
  meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/seqs-centered -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 15 -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 2504.023116
Invoking:
  streme --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out -dna --p /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/seqs-centered --minw 6 --maxw 15 --order 2
Finished invoke:
  name: streme  status: 0  time: 1585.678056
Invoking:
  centrimo -seqlen 280 -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/centrimo_out -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml combined.meme
Finished invoke:
  name: centrimo  status: 256  time: 0.20986
Invoking:
  tomtom -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml combined.meme
Finished invoke:
  name: meme_tomtom  status: 0  time: 0.249833
Invoking:
  tomtom -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml combined.meme
Finished invoke:
  name: streme_tomtom  status: 0  time: 0.398936
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/combined.meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/combined.meme 1> /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 1.23282
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary AAAAAWAMAAAAAWW /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 11.619583
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary RARKWGCTGGGATTA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.938908
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary TGTTGSCCAGGCTGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.581565
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary GAGACRGGGTTTCRC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.90402
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary GCCACCAYGCCYRGC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.26257
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary GGGAGGCBGMGGCRG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 16.637408
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary AACTCCTGACCTCAR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.766447
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary CAGTGAGCCGAGATC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.818643
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary GGTTCAAGCGATTCT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.979061
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary 6-GTCTCTACWAAAAA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.645723
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary 11-RGGHGGATCAC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.645283
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background -keepprimary -primary 12-CCCCRCCCCG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 16.376285
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_1 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif AAAAAWAMAAAAAWW /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo1  status: 0  time: 3.352035
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_2 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif RARKWGCTGGGATTA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo2  status: 0  time: 2.395782
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_3 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif TGTTGSCCAGGCTGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo3  status: 0  time: 2.368843
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_4 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif GAGACRGGGTTTCRC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo4  status: 0  time: 2.421223
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_5 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif GCCACCAYGCCYRGC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo5  status: 0  time: 2.375403
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_6 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif GGGAGGCBGMGGCRG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo6  status: 0  time: 2.434638
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_7 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif AACTCCTGACCTCAR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo7  status: 0  time: 2.324397
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_8 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif CAGTGAGCCGAGATC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo8  status: 0  time: 2.398908
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_9 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif GGTTCAAGCGATTCT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo9  status: 0  time: 2.368607
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_10 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif 6-GTCTCTACWAAAAA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo10  status: 0  time: 2.32668
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_11 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif 11-RGGHGGATCAC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo11  status: 0  time: 2.227935
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/fimo_out_12 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/background --motif 12-CCCCRCCCCG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta
Finished invoke:
  name: fimo12  status: 0  time: 2.228026
Writing output
Invoking:
  meme-chip_html_to_tsv /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/meme-chip.html /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks/summary.tsv "meme-chip -db combined.meme /scratch/jngalang/MotifAnalysis/PeakFiles/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks.fasta -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_beta_glu_TRIM1_2_peaks -meme-nmotifs 10" 5.4.1 "Sat Aug 21 19\:23\:23 2021 -0700"
Finished invoke:
  name: summary  status: 0  time: 1.169036
Done