MOTIF_INDEX MOTIF_SOURCE MOTIF_ID ALT_ID CONSENSUS WIDTH SITES E-VALUE E-VALUE_SOURCE MOST_SIMILAR_MOTIF_SOURCE MOST_SIMILAR_MOTIF URL 1 MEME WWTTTTTKTWTTTTT MEME-1 WWTTTTTKTWTTTTT 15 1552 6.2e-350 MEME 2 MEME CCTGTARTCCMRGCT MEME-2 CCTGTARTCCMRGCT 15 1001 2.7e-181 MEME combined.meme MA0107.1 (RELA) http://jaspar.genereg.net/matrix/MA0107.1 3 MEME CCTCAGCCTCCCRAR MEME-3 CCTCAGCCTCCCRAR 15 670 1.1e-157 MEME 4 MEME TAGAGAYRGGGTTTC MEME-4 TAGAGAYRGGGTTTC 15 425 5.2e-115 MEME combined.meme MA0107.1 (RELA) http://jaspar.genereg.net/matrix/MA0107.1 5 MEME GCYRGGCRTGGTGGC MEME-5 GCYRGGCRTGGTGGC 15 448 9.3e-091 MEME 6 MEME GGCGGSGGCGGSGGC MEME-6 GGCGGSGGCGGSGGC 15 1180 6.4e-066 MEME 7 MEME CTYRGCTCACTGCAA MEME-7 CTYRGCTCACTGCAA 15 208 7.0e-066 MEME 8 MEME TCAAGYGATYCTCCY MEME-8 TCAAGYGATYCTCCY 15 515 2.0e-062 MEME combined.meme MA0107.1 (RELA) http://jaspar.genereg.net/matrix/MA0107.1 9 MEME GGTCTCGAACTCCTG MEME-9 GGTCTCGAACTCCTG 15 310 7.8e-062 MEME 10 MEME GGAGTGCAGTGGCRC MEME-10 GGAGTGCAGTGGCRC 15 207 5.8e-048 MEME combined.meme MA0466.1 (CEBPB) http://jaspar.genereg.net/matrix/MA0466.1 11 STREME 1-GGGAGGCYGAGGCRG STREME-1 GGGAGGCYGAGGCRG 15 693 1.2e-018 STREME 12 STREME 2-CTGTAATCCCAGCWM STREME-2 CTGTAATCCCAGCWM 15 604 7.9e-017 STREME combined.meme MA0107.1 (RELA) http://jaspar.genereg.net/matrix/MA0107.1 13 STREME 3-CAGCCTGGSCAACA STREME-3 CAGCCTGGSCAACA 14 524 1.7e-012 STREME combined.meme MA0466.3 (CEBPB) http://jaspar.genereg.net/matrix/MA0466.3 14 STREME 4-CAGGAGTTYGAGA STREME-4 CAGGAGTTYGAGA 13 306 6.2e-010 STREME 15 STREME 5-KTAGAGAYRGGGTYT STREME-5 KTAGAGAYRGGGTYT 15 474 2.4e-009 STREME combined.meme MA0107.1 (RELA) http://jaspar.genereg.net/matrix/MA0107.1 16 STREME 6-AAAATTAGCCRGGCR STREME-6 AAAATTAGCCRGGCR 15 306 1.8e-007 STREME combined.meme MA0107.1 (RELA) http://jaspar.genereg.net/matrix/MA0107.1 17 STREME 7-TCAAGYGATY STREME-7 TCAAGYGATY 10 478 6.2e-007 STREME combined.meme MA0466.2 (CEBPB) http://jaspar.genereg.net/matrix/MA0466.2 18 STREME 8-AGTGAGCCGAGAT STREME-8 AGTGAGCCGAGAT 13 277 1.5e-006 STREME 19 STREME 9-GCRTGAGCCAC STREME-9 GCRTGAGCCAC 11 363 5.8e-005 STREME combined.meme MA0466.2 (CEBPB) http://jaspar.genereg.net/matrix/MA0466.2 20 STREME 10-GCCGCCGCCGCCGCC STREME-10 10-GCCGCCGCCGCCGCC 15 336 9.0e-005 STREME 21 STREME 11-GAGTGCAGTGGCRC STREME-11 11-GAGTGCAGTGGCRC 14 239 2.8e-004 STREME combined.meme MA0466.1 (CEBPB) http://jaspar.genereg.net/matrix/MA0466.1 22 STREME 12-GTATTTTTA STREME-12 12-GTATTTTTA 9 197 3.8e-003 STREME 23 STREME 13-GCRCCCRCCACCA STREME-13 13-GCRCCCRCCACCA 13 140 3.8e-003 STREME # MEME-ChIP (Motif Analysis of Large Nucleotide Datasets): Version 5.4.1 released on Sat Aug 21 19:23:23 2021 -0700 # The format of this file is described at https://meme-suite.org/meme//doc/meme-chip-output-format.html # meme-chip -db combined.meme /scratch/jngalang/MotifAnalysis/PeakFiles/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_5_peaks.fasta -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_5_peaks -meme-nmotifs 10