<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<tomtom version="5.4.1" release="Sat Aug 21 19:23:23 2021 -0700">
  <model>
    <command_line>tomtom -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_5_peaks/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_5_peaks/meme_out/meme.xml combined.meme</command_line>
    <distance_measure value="pearson"/>
    <threshold type="evalue">1</threshold>
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>both</strands>
    <background from="--query--" A="0.193" C="0.307" G="0.307" T="0.193"/>
    <host>cn45</host>
    <when>Wed Mar 29 17:24:02 2023</when>
  </model>
  <query_dbs>
    <db source="/scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_5_peaks/meme_out/meme.xml" name="meme.xml" loaded="10" excluded="0" last_mod_date="Wed Mar 29 17:16:12 2023"/>
  </query_dbs>
  <target_dbs>
    <db source="combined.meme" name="combined" loaded="4" excluded="0" last_mod_date="Wed Mar 29 11:16:27 2023"/>
  </target_dbs>
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      <pos A="2.88017e-05" C="0.82828" G="0.0104923" T="0.161199"/>
      <pos A="0.586508" C="0.0716771" G="0.28657" T="0.0552446"/>
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      <pos A="2.88017e-05" C="0.967065" G="4.5814e-05" T="0.0328599"/>
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