Invoking:
  getsize /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.059287
Invoking:
  fasta-most -min 50 < /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.103542
Invoking:
  fasta-center -dna -len 100 < /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta 1> /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.104186
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 2 /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background
Finished invoke:
  name: bg  status: 0  time: 0.05275
Invoking:
  meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/seqs-centered -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 15 -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 2359.283422
Invoking:
  streme --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out -dna --p /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/seqs-centered --minw 6 --maxw 15 --order 2
Finished invoke:
  name: streme  status: 0  time: 542.360822
Invoking:
  centrimo -seqlen 349 -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/centrimo_out -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml combined.meme
Finished invoke:
  name: centrimo  status: 256  time: 0.096838
Invoking:
  tomtom -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml combined.meme
Finished invoke:
  name: meme_tomtom  status: 0  time: 0.191313
Invoking:
  tomtom -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml combined.meme
Finished invoke:
  name: streme_tomtom  status: 0  time: 0.287341
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/combined.meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/combined.meme 1> /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 1.06134
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary TTTTKTWTTTTTWKT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 7.868379
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary TAATCCCAGCWMYTT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.968415
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary GGAGGCKGMGGCGGS /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 12.453257
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary CCAGGCTGGWSTSSA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.928656
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary RSYTCAAGYGATYCT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.276497
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary AGGCRTGAGCCACCR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.533515
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary GGGTYTCRCYMTGTT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.510318
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary AGTGAGCYGAGATYG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.676934
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary 5-AACTCCTGACCTCAR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.545083
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary 6-ACYCYRTCTCWA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.073399
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary 7-AAAAATTAGCYGGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.489238
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary 10-GGGYGGATCAC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.563456
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary 13-CAGCCCCGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 10.909259
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary 14-CSGGGWCCCSG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 8.266048
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary 16-CGGAAGTGA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 5.532564
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_1 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif TTTTKTWTTTTTWKT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo1  status: 0  time: 1.95204
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_2 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif TAATCCCAGCWMYTT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo2  status: 0  time: 1.666323
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_3 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif GGAGGCKGMGGCGGS /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo3  status: 0  time: 1.712335
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_4 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif CCAGGCTGGWSTSSA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo4  status: 0  time: 1.645302
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_5 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif RSYTCAAGYGATYCT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo5  status: 0  time: 1.659604
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_6 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif AGGCRTGAGCCACCR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo6  status: 0  time: 1.643561
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_7 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif GGGTYTCRCYMTGTT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo7  status: 0  time: 1.638387
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_8 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif AGTGAGCYGAGATYG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo8  status: 0  time: 1.6942
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_9 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif 5-AACTCCTGACCTCAR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo9  status: 0  time: 1.690868
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_10 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif 6-ACYCYRTCTCWA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo10  status: 0  time: 1.577802
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_11 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif 7-AAAAATTAGCYGGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo11  status: 0  time: 1.649351
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_12 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif 10-GGGYGGATCAC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo12  status: 0  time: 1.559161
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_13 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif 13-CAGCCCCGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo13  status: 0  time: 1.555704
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_14 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif 14-CSGGGWCCCSG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo14  status: 0  time: 1.536705
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_15 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif 16-CGGAAGTGA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo15  status: 0  time: 1.526096
Writing output
Invoking:
  meme-chip_html_to_tsv /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme-chip.html /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/summary.tsv "meme-chip -db combined.meme /scratch/jngalang/MotifAnalysis/PeakFiles/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks -meme-nmotifs 10" 5.4.1 "Sat Aug 21 19\:23\:23 2021 -0700"
Finished invoke:
  name: summary  status: 0  time: 0.317828
Done