Query_ID Target_ID Optimal_offset p-value E-value q-value Overlap Query_consensus Target_consensus Orientation 1 1 0 4.59626e-43 1.19503e-41 2.39005e-41 15 TTTTTTTTTTTTTTT TTTTTTTTTTTTTTT + 1 10 0 0.00016615 0.00431991 0.00431991 15 TTTTTTTTTTTTTTT AAATTTTTAATTCTT + 1 21 -5 0.000923483 0.0240106 0.016007 9 TTTTTTTTTTTTTTT TATTTTTAG - 2 2 0 2.1895e-37 5.69269e-36 1.13854e-35 15 TAATCCCAGCACTTT TAATCCCAGCACTTT + 2 11 4 1.78711e-08 4.6465e-07 4.6465e-07 11 TAATCCCAGCACTTT CCTGTAATCCCAGCA + 2 25 -4 0.00442827 0.115135 0.0767566 8 TAATCCCAGCACTTT CCCAGCCC + 3 3 0 9.25512e-38 2.40633e-36 4.81266e-36 15 GGAGGCGGAGGCGGG GGAGGCGGAGGCGGG + 3 13 3 5.49928e-06 0.000142981 0.000125443 12 GGAGGCGGAGGCGGG TTGGGAGGCTGAGGC - 3 22 0 7.23707e-06 0.000188164 0.000125443 12 GGAGGCGGAGGCGGG GGAGGCGGAGGT - 3 9 -1 0.00191947 0.0499063 0.0249531 14 GGAGGCGGAGGCGGG GGGGCGGGGGCGGGG - 4 4 0 3.23411e-35 8.40868e-34 1.68174e-33 15 CCAGGCTGGTCTCGA CCAGGCTGGTCTCGA + 4 12 6 3.40103e-05 0.000884268 0.000884268 9 CCAGGCTGGTCTCGA TGTTGGCCAGGCTGG - 5 5 0 1.35446e-34 3.52158e-33 7.04317e-33 15 GGCTCAAGTGATCCT GGCTCAAGTGATCCT + 5 18 -2 4.17536e-08 1.08559e-06 1.08559e-06 13 GGCTCAAGTGATCCT TTCAAGCGATTCTCC - 6 6 0 6.74698e-36 1.75421e-34 3.50843e-34 15 AGGCGTGAGCCACCA AGGCGTGAGCCACCA + 6 14 -6 0.00261029 0.0678676 0.0678676 9 AGGCGTGAGCCACCA GAGCCACTGCACC + 7 7 0 6.17008e-38 1.60422e-36 3.20844e-36 15 GGGTTTCACCATGTT GGGTTTCACCATGTT + 8 8 0 7.63914e-37 1.98618e-35 3.97236e-35 15 AGTGAGCCGAGATCG AGTGAGCCGAGATCG + 8 19 2 3.38953e-11 8.81278e-10 8.81278e-10 13 AGTGAGCCGAGATCG GCAGTGAGCCGAGAT - 9 9 0 2.06593e-41 5.37143e-40 1.07429e-39 15 CCCCGCCCCCGCCCC CCCCGCCCCCGCCCC + 9 3 -1 0.00157384 0.0409199 0.0409199 14 CCCCGCCCCCGCCCC CCCGCCTCCGCCTCC - 9 24 0 0.00622768 0.16192 0.0809599 11 CCCCGCCCCCGCCCC CGGGGACCCCG + 9 25 0 0.0090714 0.235856 0.0943426 8 CCCCGCCCCCGCCCC CCCAGCCC + 10 10 0 2.75495e-42 7.16288e-41 1.43258e-40 15 AAATTTTTAATTCTT AAATTTTTAATTCTT + 10 1 3 6.46168e-05 0.00168004 0.00112002 12 AAATTTTTAATTCTT TTTTTTTTTTTTTTT + 10 21 -1 0.00959666 0.249513 0.0998053 9 AAATTTTTAATTCTT TATTTTTAG - 11 11 0 1.14532e-36 2.97783e-35 5.95567e-35 15 CCTGTAATCCCAGCA CCTGTAATCCCAGCA + 11 2 -4 6.84827e-06 0.000178055 0.000178055 11 CCTGTAATCCCAGCA TAATCCCAGCACTTT + 12 12 0 6.5156e-37 1.69406e-35 3.38811e-35 15 CCAGCCTGGCCAACA CCAGCCTGGCCAACA + 12 4 0 0.000203785 0.00529841 0.00529841 15 CCAGCCTGGCCAACA CCAGGCTGGTCTCGA + 13 13 0 3.88559e-32 1.01025e-30 2.02051e-30 15 GCCTCAGCCTCCCAA GCCTCAGCCTCCCAA + 13 22 0 2.06592e-05 0.00053714 0.000402468 12 GCCTCAGCCTCCCAA ACCTCCGCCTCC + 13 3 3 2.32193e-05 0.000603702 0.000402468 12 GCCTCAGCCTCCCAA CCCGCCTCCGCCTCC - 14 14 0 5.79744e-31 1.50733e-29 3.01467e-29 13 GAGCCACTGCACC GAGCCACTGCACC + 14 6 6 0.000263781 0.00685831 0.00685831 9 GAGCCACTGCACC AGGCGTGAGCCACCA + 15 15 0 1.41089e-36 3.66832e-35 7.33663e-35 15 AACTCCTGACCTCAA AACTCCTGACCTCAA + 16 16 0 2.39047e-26 6.21523e-25 1.24305e-24 12 ACCCCGTCTCTA ACCCCGTCTCTA + 17 17 0 1.62666e-33 4.2293e-32 8.45861e-32 14 AAAAATTAGCCGGG AAAAATTAGCCGGG + 18 18 0 1.07839e-38 2.8038e-37 5.60761e-37 15 GGAGAATCGCTTGAA GGAGAATCGCTTGAA + 18 5 -2 1.74062e-06 4.52561e-05 4.52561e-05 13 GGAGAATCGCTTGAA AGGATCACTTGAGCC - 19 19 0 3.85244e-37 1.00164e-35 2.00327e-35 15 ATCTCGGCTCACTGC ATCTCGGCTCACTGC + 19 8 2 2.4698e-09 6.42148e-08 6.42148e-08 13 ATCTCGGCTCACTGC CGATCTCGGCTCACT - 20 20 0 4.56077e-25 1.1858e-23 2.3716e-23 11 GGGCGGATCAC GGGCGGATCAC + 21 21 0 5.21851e-18 1.35681e-16 2.71363e-16 9 CTAAAAATA CTAAAAATA + 21 1 1 0.00208433 0.0541926 0.0541926 9 CTAAAAATA AAAAAAAAAAAAAAA - 22 22 0 2.1397e-30 5.56322e-29 1.11264e-28 12 ACCTCCGCCTCC ACCTCCGCCTCC + 22 13 0 1.67971e-05 0.000436724 0.000410436 12 ACCTCCGCCTCC GCCTCAGCCTCCCAA + 22 3 3 2.3679e-05 0.000615653 0.000410436 12 ACCTCCGCCTCC CCCGCCTCCGCCTCC - 23 23 0 1.46118e-24 3.79908e-23 7.59816e-23 9 CAGCCCCGG CAGCCCCGG + 24 24 0 8.82507e-28 2.29452e-26 2.29452e-26 11 CGGGGACCCCG CGGGGACCCCG + 25 25 0 5.08492e-18 1.32208e-16 2.64416e-16 8 CCCAGCCC CCCAGCCC + 25 2 4 0.00081863 0.0212844 0.0212844 8 CCCAGCCC TAATCCCAGCACTTT + 25 11 8 0.00385136 0.100135 0.066757 7 CCCAGCCC CCTGTAATCCCAGCA + 26 26 0 3.22379e-21 8.38185e-20 1.67637e-19 9 CGGAAGTGA CGGAAGTGA + # Tomtom (Motif Comparison Tool): Version 5.4.1 compiled on Aug 1 2022 at 17:19:44 # The format of this file is described at https://meme-suite.org/meme/doc/tomtom-output-format.html. # tomtom -verbosity 1 -text -thresh 0.1 /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/combined.meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/combined.meme