Invoking:
  getsize /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.072469
Invoking:
  fasta-most -min 50 < /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.083672
Invoking:
  fasta-center -dna -len 100 < /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta 1> /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.124874
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 2 /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background
Finished invoke:
  name: bg  status: 0  time: 0.063534
Invoking:
  meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/seqs-centered -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 15 -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 2442.288489
Invoking:
  streme --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out -dna --p /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/seqs-centered --minw 6 --maxw 15 --order 2
Finished invoke:
  name: streme  status: 0  time: 1043.105699
Invoking:
  centrimo -seqlen 299 -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/centrimo_out -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml combined.meme
Finished invoke:
  name: centrimo  status: 256  time: 0.107241
Invoking:
  tomtom -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml combined.meme
Finished invoke:
  name: meme_tomtom  status: 0  time: 0.197749
Invoking:
  tomtom -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml combined.meme
Finished invoke:
  name: streme_tomtom  status: 0  time: 0.330899
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/combined.meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/combined.meme 1> /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 1.125263
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -keepprimary -primary AAAAAWAMAAAAAWW /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 6.745517
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -keepprimary -primary RKWGCTGGGATTACA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.776715
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -keepprimary -primary TGTTGSCCAGGCTGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.506371
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -keepprimary -primary GTAGAGAYRGGGTTT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.243498
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -keepprimary -primary GCCTCRGCCTCCCAA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.038914
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -keepprimary -primary GCYGGGCRTGGTGGC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.884092
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -keepprimary -primary AACTCCTGRSCTCAR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.240381
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -keepprimary -primary TCTYRGCTCACTGCA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.36715
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -keepprimary -primary 4-RATCRCTTGA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.209233
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -keepprimary -primary 7-AAAATTAGCCRGGC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.253413
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background -keepprimary -primary 10-CRTGAGCCACCRC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.59689
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/fimo_out_1 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background --motif AAAAAWAMAAAAAWW /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta
Finished invoke:
  name: fimo1  status: 0  time: 2.288136
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/fimo_out_2 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background --motif RKWGCTGGGATTACA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta
Finished invoke:
  name: fimo2  status: 0  time: 2.002372
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/fimo_out_3 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background --motif TGTTGSCCAGGCTGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta
Finished invoke:
  name: fimo3  status: 0  time: 1.967409
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/fimo_out_4 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background --motif GTAGAGAYRGGGTTT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta
Finished invoke:
  name: fimo4  status: 0  time: 1.971317
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/fimo_out_5 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background --motif GCCTCRGCCTCCCAA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta
Finished invoke:
  name: fimo5  status: 0  time: 1.965653
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/fimo_out_6 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background --motif GCYGGGCRTGGTGGC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta
Finished invoke:
  name: fimo6  status: 0  time: 2.004643
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/fimo_out_7 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background --motif AACTCCTGRSCTCAR /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta
Finished invoke:
  name: fimo7  status: 0  time: 1.986869
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/fimo_out_8 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background --motif TCTYRGCTCACTGCA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta
Finished invoke:
  name: fimo8  status: 0  time: 1.974393
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/fimo_out_9 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background --motif 4-RATCRCTTGA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta
Finished invoke:
  name: fimo9  status: 0  time: 1.855438
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/fimo_out_10 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background --motif 7-AAAATTAGCCRGGC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta
Finished invoke:
  name: fimo10  status: 0  time: 1.972805
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/fimo_out_11 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/background --motif 10-CRTGAGCCACCRC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta
Finished invoke:
  name: fimo11  status: 0  time: 1.965294
Writing output
Invoking:
  meme-chip_html_to_tsv /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/meme-chip.html /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks/summary.tsv "meme-chip -db combined.meme /scratch/jngalang/MotifAnalysis/PeakFiles/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks.fasta -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_1_peaks -meme-nmotifs 10" 5.4.1 "Sat Aug 21 19\:23\:23 2021 -0700"
Finished invoke:
  name: summary  status: 0  time: 0.094133
Done