Invoking:
  getsize /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.089445
Invoking:
  fasta-most -min 50 < /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.099998
Invoking:
  fasta-center -dna -len 100 < /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta 1> /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.141952
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 2 /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background
Finished invoke:
  name: bg  status: 0  time: 0.07272
Invoking:
  meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/seqs-centered -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 15 -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 2552.334793
Invoking:
  streme --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out -dna --p /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/seqs-centered --minw 6 --maxw 15 --order 2
Finished invoke:
  name: streme  status: 0  time: 1149.647168
Invoking:
  centrimo -seqlen 245 -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/centrimo_out -bfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml combined.meme
Finished invoke:
  name: centrimo  status: 256  time: 0.261265
Invoking:
  tomtom -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml combined.meme
Finished invoke:
  name: meme_tomtom  status: 0  time: 0.298699
Invoking:
  tomtom -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml combined.meme
Finished invoke:
  name: streme_tomtom  status: 0  time: 0.3642
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/combined.meme /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/combined.meme 1> /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 1.27105
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary AMWAAAAAWAMAAAA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 10.504993
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary CCTGTAATCCCAGCW /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.821642
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary GGAGGCBGMGGCRGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 15.770802
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary CCAGCCTGGSCAACA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.715401
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary AGGTCAGGAGTTCGA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.370106
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary GTGAAACCCYRTCTC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.316567
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary GCCACCAYGCCYRGC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.305807
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary GGTTCAAGYGATTCT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.10859
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary GCTCACTGCAACCTC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.714245
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary ATCRYGCCACTGCAC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.631176
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary 5-ATTTTTAGTAGAGAY /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.204203
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background -keepprimary -primary 6-AAATTAGCYGGGCRT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.731177
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_1 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif AMWAAAAAWAMAAAA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo1  status: 0  time: 2.573482
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_2 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif CCTGTAATCCCAGCW /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo2  status: 0  time: 2.191019
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_3 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif GGAGGCBGMGGCRGG /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo3  status: 0  time: 2.290362
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_4 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif CCAGCCTGGSCAACA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo4  status: 0  time: 2.246355
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_5 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif AGGTCAGGAGTTCGA /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo5  status: 0  time: 2.172525
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_6 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif GTGAAACCCYRTCTC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo6  status: 0  time: 2.195199
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_7 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif GCCACCAYGCCYRGC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo7  status: 0  time: 2.157973
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_8 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif GGTTCAAGYGATTCT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo8  status: 0  time: 2.16239
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_9 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif GCTCACTGCAACCTC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo9  status: 0  time: 2.166731
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_10 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif ATCRYGCCACTGCAC /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo10  status: 0  time: 2.181428
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_11 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif 5-ATTTTTAGTAGAGAY /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo11  status: 0  time: 2.232286
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/fimo_out_12 --bgfile /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/background --motif 6-AAATTAGCYGGGCRT /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta
Finished invoke:
  name: fimo12  status: 0  time: 2.163613
Writing output
Invoking:
  meme-chip_html_to_tsv /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/meme-chip.html /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks/summary.tsv "meme-chip -db combined.meme /scratch/jngalang/MotifAnalysis/PeakFiles/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks.fasta -oc /scratch/jngalang/MotifAnalysis/NewMemeChip/GRCh38-107_AZ_exp1_d0_TRIM1_0_peaks -meme-nmotifs 10" 5.4.1 "Sat Aug 21 19\:23\:23 2021 -0700"
Finished invoke:
  name: summary  status: 0  time: 0.388658
Done