Invoking:
  getsize /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.059224
Invoking:
  fasta-most -min 50 < /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.07306
Invoking:
  fasta-center -dna -len 100 < /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta 1> /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.102724
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 2 /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background
Finished invoke:
  name: bg  status: 0  time: 0.052725
Invoking:
  meme /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/seqs-centered -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 20 -bfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 3308.560643
Invoking:
  streme --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out -dna --p /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/seqs-centered --minw 5 --maxw 20 --order 2
Finished invoke:
  name: streme  status: 0  time: 546.785515
Invoking:
  centrimo -seqlen 349 -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/centrimo_out -bfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: centrimo  status: 256  time: 0.072676
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/combined.meme /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/combined.meme 1> /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 1.992369
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary TTTTDTWTTTTTWKTWKAGA /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 9.157417
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary GTAATCCCAGCWMYTTGG /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.545782
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary ATCRCTTGARSYCAGGAGKT /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.251817
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary ATCTCRGCTCACTGCAACCT /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.503726
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary WCCAGCCTGGSCAACA /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 3.334041
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary GVGGCBGVGGCVGGRG /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 14.757908
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary AGGCRTGAGCCACCRY /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.469714
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary 3-WKTWGAGAYRGRGTYTCR /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.573643
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary AGGTCAGGAGTTCGAG /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.79172
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary 6-AAAAATTAGCYRGGCRTGGT /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 1.386106
Invoking:
  spamo -verbosity 1 -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/spamo_out_1 -bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background -keepprimary -primary 12-AGTGCAGTGGYRCR /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 256  time: 2.169267
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_1 --bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif TTTTDTWTTTTTWKTWKAGA /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo1  status: 0  time: 2.143036
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_2 --bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif GTAATCCCAGCWMYTTGG /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo2  status: 0  time: 1.734123
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_3 --bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif ATCRCTTGARSYCAGGAGKT /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo3  status: 0  time: 1.807868
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_4 --bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif ATCTCRGCTCACTGCAACCT /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo4  status: 0  time: 1.750738
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_5 --bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif WCCAGCCTGGSCAACA /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo5  status: 0  time: 1.683373
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_6 --bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif GVGGCBGVGGCVGGRG /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo6  status: 0  time: 1.748936
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_7 --bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif AGGCRTGAGCCACCRY /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo7  status: 0  time: 1.679608
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_8 --bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif 3-WKTWGAGAYRGRGTYTCR /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo8  status: 0  time: 1.726266
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_9 --bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif AGGTCAGGAGTTCGAG /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme_out/meme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo9  status: 0  time: 1.695626
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_10 --bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif 6-AAAAATTAGCYRGGCRTGGT /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo10  status: 0  time: 1.779891
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/fimo_out_11 --bgfile /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/background --motif 12-AGTGCAGTGGYRCR /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/streme_out/streme.xml /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta
Finished invoke:
  name: fimo11  status: 0  time: 1.633671
Writing output
Invoking:
  meme-chip_html_to_tsv /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/meme-chip.html /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks/summary.tsv "meme-chip /scratch/jngalang/MotifAnalysis/PeakFiles/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks.fasta -oc /scratch/jngalang/MotifAnalysis/MemeChipOutput/GRCh38-107_AZ_exp1_d1_LPS_TRIM1_4_peaks -meme-nmotifs 10 -minw 5 -maxw 20" 5.4.1 "Sat Aug 21 19\:23\:23 2021 -0700"
Finished invoke:
  name: summary  status: 0  time: 0.091545
Done