GimmeMotifs v0.15.1

GimmeMotifs_1 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0199 6.83e-06
nGCAyGTA	Database match

Significance and enrichment

gc enrichment 25.00 p-value 0.00 ROC_AUC 0.747 MNCP 4.161

Positional Preference Plot

(Fullscreen)

GimmeMotifs_2 (Gimme)

Motif and consensus

	GM.5.0.Homeodomain.0023 7.55e-02
yAnATrTACATnTrywGAkr	Database match

Significance and enrichment

gc enrichment 12.50 p-value 0.00 ROC_AUC 0.701 MNCP 3.340

Positional Preference Plot

(Fullscreen)

GimmeMotifs_3 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0045 4.86e-03
ACAywTGnwGrGrT	Database match

Significance and enrichment

gc enrichment 7.45 p-value 0.02 ROC_AUC 0.689 MNCP 2.802

Positional Preference Plot

(Fullscreen)

GimmeMotifs_4 (Gimme)

Motif and consensus

	GM.5.0.Forkhead.0005 8.95e-03
yAwrwGwACAwA	Database match

Significance and enrichment

gc enrichment 15.00 p-value 0.00 ROC_AUC 0.683 MNCP 3.406

Positional Preference Plot

(Fullscreen)

GimmeMotifs_5 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0288 5.26e-14
GCGsGG	Database match

Significance and enrichment

gc enrichment 3.20 p-value 0.01 ROC_AUC 0.625 MNCP 2.811

Positional Preference Plot

(Fullscreen)

GimmeMotifs_6 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0183 1.37e-02
CrCrnmCnTAwyyGTGnr	Database match

Significance and enrichment

gc enrichment 2.50 p-value 0.38 ROC_AUC 0.652 MNCP 2.295

Positional Preference Plot

(Fullscreen)

GimmeMotifs_7 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0207 1.39e-02
rGyGCGCmmATTTT	Database match

Significance and enrichment

gc enrichment 10.00 p-value 0.00 ROC_AUC 0.609 MNCP 2.609

Positional Preference Plot

(Fullscreen)

GimmeMotifs_8 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0007 1.56e-02
TTTTwTkyTGCGCAyG	Database match

Significance and enrichment

gc enrichment 2.50 p-value 0.38 ROC_AUC 0.643 MNCP 1.834

Positional Preference Plot

(Fullscreen)

GimmeMotifs_9 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0243 6.24e-07
GGGGGCGA	Database match

Significance and enrichment

gc enrichment 2.50 p-value 0.38 ROC_AUC 0.607 MNCP 1.890

Positional Preference Plot

(Fullscreen)

GimmeMotifs_10 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0007 1.98e-05
CATGCkCGGT	Database match

Significance and enrichment

gc enrichment 5.00 p-value 0.10 ROC_AUC 0.581 MNCP 1.781

Positional Preference Plot

(Fullscreen)

GimmeMotifs_11 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0135 4.10e-01
CAGCGGrksGCGCACA	Database match

Significance and enrichment

gc enrichment 7.50 p-value 0.02 ROC_AUC 0.577 MNCP 2.046

Positional Preference Plot

(Fullscreen)

GimmeMotifs_12 (Gimme)

Motif and consensus

	GM.5.0.bZIP.0080 2.84e-04
ArCrGrGyGCGC	Database match

Significance and enrichment

gc enrichment 2.50 p-value 0.38 ROC_AUC 0.559 MNCP 1.574

Positional Preference Plot

(Fullscreen)

GimmeMotifs_13 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0096 7.25e-06
CGCsCmGTGG	Database match

Significance and enrichment

gc enrichment 6.67 p-value 0.07 ROC_AUC 0.555 MNCP 1.964

Positional Preference Plot

(Fullscreen)

GimmeMotifs_14 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0121 1.71e-03
GmkGksGkGwkGkGGm	Database match

Significance and enrichment

gc enrichment 2.50 p-value 0.38 ROC_AUC 0.553 MNCP 1.740

Positional Preference Plot

(Fullscreen)

GimmeMotifs_15 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0040 2.18e-12
GTGGGC	Database match

Significance and enrichment

gc enrichment 2.50 p-value 0.38 ROC_AUC 0.751 MNCP 2.336

Positional Preference Plot

(Fullscreen)

GimmeMotifs_16 (Gimme)

Motif and consensus

	GM.5.0.Homeodomain.0164 1.62e-02
CAAATGTACCTTTATA	Database match

Significance and enrichment

gc enrichment 12.00 p-value 0.00 ROC_AUC 0.702 MNCP 2.792

Positional Preference Plot

(Fullscreen)

GimmeMotifs_17 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0081 1.47e-04
GCCCAC	Database match

Significance and enrichment

gc enrichment 2.50 p-value 0.38 ROC_AUC 0.613 MNCP 1.578

Positional Preference Plot

(Fullscreen)

GimmeMotifs_18 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0100 2.29e-01
AmGCACAywwTATssTGCGC	Database match

Significance and enrichment

gc enrichment 2.50 p-value 0.38 ROC_AUC 0.612 MNCP 1.541

Positional Preference Plot

(Fullscreen)

GimmeMotifs_19 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0030 8.54e-14
ACGCGGAC	Database match

Significance and enrichment

gc enrichment 5.00 p-value 0.25 ROC_AUC 0.583 MNCP 1.492

Positional Preference Plot

(Fullscreen)

GimmeMotifs_20 (Gimme)

Motif and consensus

	GM.5.0.Nuclear_receptor.0145 7.16e-06
AGCACTCA	Database match

Significance and enrichment

gc enrichment 2.50 p-value 0.38 ROC_AUC 0.573 MNCP 1.258

Positional Preference Plot

(Fullscreen)

GimmeMotifs_21 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0248 1.58e-14
mTTTTT	Database match

Significance and enrichment

gc enrichment 2.50 p-value 0.38 ROC_AUC 0.568 MNCP 1.463

Positional Preference Plot

(Fullscreen)

GimmeMotifs_22 (Gimme)

Motif and consensus

	GM.5.0.Runt.0004 1.33e-02
AnGTnnnTGTGTGG	Database match

Significance and enrichment

gc enrichment 5.00 p-value 0.10 ROC_AUC 0.563 MNCP 1.949

Positional Preference Plot

(Fullscreen)

GimmeMotifs_23 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0081 1.95e-05
GTGnGGnGsGGG	Database match

Significance and enrichment

gc enrichment 5.00 p-value 0.10 ROC_AUC 0.561 MNCP 1.326

Positional Preference Plot

(Fullscreen)

Result Files

• Results
• Cluster report
• Weight matrices
• Parameters
• Log

Identified Motifs

• GimmeMotifs_1
• GimmeMotifs_2
• GimmeMotifs_3
• GimmeMotifs_4
• GimmeMotifs_5
• GimmeMotifs_6
• GimmeMotifs_7
• GimmeMotifs_8
• GimmeMotifs_9
• GimmeMotifs_10
• GimmeMotifs_11
• GimmeMotifs_12
• GimmeMotifs_13
• GimmeMotifs_14
• GimmeMotifs_15
• GimmeMotifs_16
• GimmeMotifs_17
• GimmeMotifs_18
• GimmeMotifs_19
• GimmeMotifs_20
• GimmeMotifs_21
• GimmeMotifs_22
• GimmeMotifs_23

Reference

Please cite:
van Heeringen, SJ and Veenstra, GJC, Bioinformatics.