GimmeMotifs v0.15.1

GimmeMotifs_1 (Gimme)

Motif and consensus

	GM.5.0.bZIP.0087 1.20e-06
TTTTTTTTTTTTTTTTyymT	Database match

Significance and enrichment

random enrichment 62.00 p-value 0.00 ROC_AUC 0.906 MNCP 8.889

Positional Preference Plot

(Fullscreen)

GimmeMotifs_2 (Gimme)

Motif and consensus

	GM.5.0.bZIP.0087 7.95e-05
TTTTTTTyynCnTTTT	Database match

Significance and enrichment

random enrichment 38.00 p-value 0.00 ROC_AUC 0.880 MNCP 7.469

Positional Preference Plot

(Fullscreen)

GimmeMotifs_3 (Gimme)

Motif and consensus

	GM.5.0.Homeodomain_POU.0010 3.98e-01
yATATryATATryAyATATr	Database match

Significance and enrichment

random enrichment 46.00 p-value 0.00 ROC_AUC 0.845 MNCP 7.232

Positional Preference Plot

(Fullscreen)

GimmeMotifs_4 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0091 3.32e-01
TrTrCAyGmGCGCATrTr	Database match

Significance and enrichment

random enrichment 36.00 p-value 0.00 ROC_AUC 0.807 MNCP 6.098

Positional Preference Plot

(Fullscreen)

GimmeMotifs_5 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0065 1.22e-07
GGGGGGnrrn	Database match

Significance and enrichment

random enrichment 22.00 p-value 0.00 ROC_AUC 0.773 MNCP 4.831

Positional Preference Plot

(Fullscreen)

GimmeMotifs_6 (Gimme)

Motif and consensus

	GM.5.0.MADS_box.0009 1.56e-01
TAnATGyACmTATGCG	Database match

Significance and enrichment

random enrichment 14.00 p-value 0.00 ROC_AUC 0.781 MNCP 4.396

Positional Preference Plot

(Fullscreen)

GimmeMotifs_7 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0050 3.86e-01
TGCGyACATwTGTrCwTrCr	Database match

Significance and enrichment

random enrichment 16.00 p-value 0.00 ROC_AUC 0.790 MNCP 4.258

Positional Preference Plot

(Fullscreen)

GimmeMotifs_8 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0115 1.91e-02
nAsCyACATrTGCr	Database match

Significance and enrichment

random enrichment 22.00 p-value 0.00 ROC_AUC 0.734 MNCP 4.490

Positional Preference Plot

(Fullscreen)

GimmeMotifs_9 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0095 2.01e-02
TTTTTkTGCkyATwTTkGCA	Database match

Significance and enrichment

random enrichment 14.00 p-value 0.00 ROC_AUC 0.816 MNCP 5.085

Positional Preference Plot

(Fullscreen)

GimmeMotifs_10 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0207 1.84e-13
rGGGGGGw	Database match

Significance and enrichment

random enrichment 6.67 p-value 0.00 ROC_AUC 0.754 MNCP 3.534

Positional Preference Plot

(Fullscreen)

GimmeMotifs_11 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0081 3.83e-13
GGGGGGGGGGGG	Database match

Significance and enrichment

random enrichment 22.00 p-value 0.00 ROC_AUC 0.721 MNCP 4.093

Positional Preference Plot

(Fullscreen)

GimmeMotifs_12 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0066 1.06e-09
GGGrrrGGGGGGGG	Database match

Significance and enrichment

random enrichment 12.00 p-value 0.00 ROC_AUC 0.735 MNCP 3.339

Positional Preference Plot

(Fullscreen)

GimmeMotifs_13 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0081 5.95e-08
GsGGnGsG	Database match

Significance and enrichment

random enrichment 12.00 p-value 0.00 ROC_AUC 0.699 MNCP 3.241

Positional Preference Plot

(Fullscreen)

GimmeMotifs_14 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0257 1.21e-04
ATGTGC	Database match

Significance and enrichment

random enrichment 5.83 p-value 0.00 ROC_AUC 0.735 MNCP 3.175

Positional Preference Plot

(Fullscreen)

GimmeMotifs_15 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0101 1.15e-02
TTTGyTyrCATTTTTk	Database match

Significance and enrichment

random enrichment 6.00 p-value 0.03 ROC_AUC 0.671 MNCP 2.566

Positional Preference Plot

(Fullscreen)

GimmeMotifs_16 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0111 0.00e+00
CACGCG	Database match

Significance and enrichment

random enrichment 7.50 p-value 0.00 ROC_AUC 0.670 MNCP 2.503

Positional Preference Plot

(Fullscreen)

GimmeMotifs_17 (Gimme)

Motif and consensus

	GM.5.0.Rel.0002 5.37e-03
TTTTTCCkTTGC	Database match

Significance and enrichment

random enrichment 4.00 p-value 0.13 ROC_AUC 0.639 MNCP 2.172

Positional Preference Plot

(Fullscreen)

GimmeMotifs_18 (Gimme)

Motif and consensus

	GM.5.0.Homeodomain_POU.0023 1.11e-03
ATGCAyACmCsC	Database match

Significance and enrichment

random enrichment 6.67 p-value 0.01 ROC_AUC 0.769 MNCP 2.973

Positional Preference Plot

(Fullscreen)

GimmeMotifs_19 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0146 6.69e-05
TTTTTTCC	Database match

Significance and enrichment

random enrichment 3.33 p-value 0.16 ROC_AUC 0.695 MNCP 2.285

Positional Preference Plot

(Fullscreen)

GimmeMotifs_20 (Gimme)

Motif and consensus

	GM.5.0.Ets.0022 0.00e+00
GAAGGA	Database match

Significance and enrichment

random enrichment 7.27 p-value 0.00 ROC_AUC 0.685 MNCP 2.630

Positional Preference Plot

(Fullscreen)

GimmeMotifs_21 (Gimme)

Motif and consensus

	GM.5.0.Homeodomain.0023 9.92e-06
yACATATA	Database match

Significance and enrichment

random enrichment 6.00 p-value 0.03 ROC_AUC 0.756 MNCP 3.103

Positional Preference Plot

(Fullscreen)

GimmeMotifs_22 (Gimme)

Motif and consensus

	GM.5.0.Nuclear_receptor.0034 1.29e-01
TTknCCCCGCGCnGnAnGmG	Database match

Significance and enrichment

random enrichment 6.00 p-value 0.03 ROC_AUC 0.666 MNCP 2.639

Positional Preference Plot

(Fullscreen)

GimmeMotifs_23 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0285 2.02e-02
CywyATTTGTGC	Database match

Significance and enrichment

random enrichment 4.00 p-value 0.13 ROC_AUC 0.749 MNCP 2.345

Positional Preference Plot

(Fullscreen)

GimmeMotifs_24 (Gimme)

Motif and consensus

	GM.5.0.STAT.0013 1.13e-01
AAArkGGGnAnsGGAAAA	Database match

Significance and enrichment

random enrichment 4.00 p-value 0.13 ROC_AUC 0.745 MNCP 2.978

Positional Preference Plot

(Fullscreen)

GimmeMotifs_25 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0161 7.01e-06
GAAGGA	Database match

Significance and enrichment

random enrichment 7.50 p-value 0.00 ROC_AUC 0.637 MNCP 2.729

Positional Preference Plot

(Fullscreen)

GimmeMotifs_26 (Gimme)

Motif and consensus

	GM.5.0.E2F.0021 2.55e-15
GCGCAC	Database match

Significance and enrichment

random enrichment 8.00 p-value 0.00 ROC_AUC 0.618 MNCP 2.335

Positional Preference Plot

(Fullscreen)

GimmeMotifs_27 (Gimme)

Motif and consensus

	GM.5.0.STAT.0025 7.68e-11
AAAGGGGG	Database match

Significance and enrichment

random enrichment 1.67 p-value 0.37 ROC_AUC 0.710 MNCP 1.990

Positional Preference Plot

(Fullscreen)

GimmeMotifs_28 (Gimme)

Motif and consensus

	GM.5.0.Homeodomain.0140 6.60e-05
ATATAT	Database match

Significance and enrichment

random enrichment 1.45 p-value 0.18 ROC_AUC 0.671 MNCP 1.770

Positional Preference Plot

(Fullscreen)

GimmeMotifs_29 (Gimme)

Motif and consensus

	GM.5.0.GATA.0030 1.59e-04
AAAnGGTGGG	Database match

Significance and enrichment

random enrichment 3.33 p-value 0.16 ROC_AUC 0.628 MNCP 1.596

Positional Preference Plot

(Fullscreen)

GimmeMotifs_30 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0142 5.09e-02
CCCCnyTkyGynTTsCCC	Database match

Significance and enrichment

random enrichment 2.00 p-value 0.44 ROC_AUC 0.618 MNCP 1.598

Positional Preference Plot

(Fullscreen)

GimmeMotifs_31 (Gimme)

Motif and consensus

	GM.5.0.Homeodomain.0181 2.50e-05
CGTTTTGC	Database match

Significance and enrichment

random enrichment 0.62 p-value 0.81 ROC_AUC 0.588 MNCP 1.310

Positional Preference Plot

(Fullscreen)

GimmeMotifs_32 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0147 2.59e-02
CsCnTTsCrATkCCCsmsGw	Database match

Significance and enrichment

random enrichment 2.00 p-value 0.44 ROC_AUC 0.583 MNCP 1.367

Positional Preference Plot

(Fullscreen)

GimmeMotifs_33 (Gimme)

Motif and consensus

	GM.5.0.bZIP.0068 1.45e-04
GCAGGkGrTGTGCG	Database match

Significance and enrichment

random enrichment 2.00 p-value 0.44 ROC_AUC 0.562 MNCP 1.295

Positional Preference Plot

(Fullscreen)

Result Files

• Results
• Cluster report
• Weight matrices
• Parameters
• Log

Identified Motifs

• GimmeMotifs_1
• GimmeMotifs_2
• GimmeMotifs_3
• GimmeMotifs_4
• GimmeMotifs_5
• GimmeMotifs_6
• GimmeMotifs_7
• GimmeMotifs_8
• GimmeMotifs_9
• GimmeMotifs_10
• GimmeMotifs_11
• GimmeMotifs_12
• GimmeMotifs_13
• GimmeMotifs_14
• GimmeMotifs_15
• GimmeMotifs_16
• GimmeMotifs_17
• GimmeMotifs_18
• GimmeMotifs_19
• GimmeMotifs_20
• GimmeMotifs_21
• GimmeMotifs_22
• GimmeMotifs_23
• GimmeMotifs_24
• GimmeMotifs_25
• GimmeMotifs_26
• GimmeMotifs_27
• GimmeMotifs_28
• GimmeMotifs_29
• GimmeMotifs_30
• GimmeMotifs_31
• GimmeMotifs_32
• GimmeMotifs_33

Reference

Please cite:
van Heeringen, SJ and Veenstra, GJC, Bioinformatics.