Module	Section	Sample Name	Source
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_1uM_2_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_1uM_2_bio.fastp.json
fastp	all_sections	HSC_D12_TA_1uM_3_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_1uM_3_bio.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_1_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_1_bio.fastp.json
fastp	all_sections	HSC_D12_TA_100nM_2_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_100nM_2_bio.fastp.json
fastp	all_sections	HSC_D12_DMSO_2_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_DMSO_2_bio.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_1uM_2_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_1uM_2_tech.fastp.json
fastp	all_sections	HSC_D12_TA_1uM_1_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_1uM_1_bio.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_1uM_3_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_1uM_3_tech.fastp.json
fastp	all_sections	RU_1uM_plus_TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/RU_1uM_plus_TA_100nM_2.fastp.json
fastp	all_sections	DMSO_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/DMSO_2.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_3_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_3_tech.fastp.json
fastp	all_sections	TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/TA_1uM_2.fastp.json
fastp	all_sections	HSC_D12_TA_1uM_2_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_1uM_2_tech.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_100nM_2_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_100nM_2_tech.fastp.json
fastp	all_sections	RU_1uM_plus_TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/RU_1uM_plus_TA_100nM_1.fastp.json
fastp	all_sections	HSC_D12_DMSO_2_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_DMSO_2_tech.fastp.json
fastp	all_sections	RU_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/RU_1uM_2.fastp.json
fastp	all_sections	TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/TA_100nM_2.fastp.json
fastp	all_sections	HSC_D12_TA_100nM_1_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_100nM_1_tech.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_3_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_3_bio.fastp.json
fastp	all_sections	DMSO_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/DMSO_1.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_100nM_3_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_100nM_3_bio.fastp.json
fastp	all_sections	TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/TA_1uM_1.fastp.json
fastp	all_sections	TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/TA_1uM_3.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_100nM_2_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_100nM_2_bio.fastp.json
fastp	all_sections	RU_1uM_plus_TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/RU_1uM_plus_TA_1uM_3.fastp.json
fastp	all_sections	RU_1uM_plus_TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/RU_1uM_plus_TA_1uM_1.fastp.json
fastp	all_sections	RU_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/RU_1uM_1.fastp.json
fastp	all_sections	RU_1uM_plus_TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/RU_1uM_plus_TA_1uM_2.fastp.json
fastp	all_sections	HSC_D12_TA_1uM_2_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_1uM_2_bio.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_1uM_1_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_1uM_1_tech.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_1uM_1_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_1uM_1_bio.fastp.json
fastp	all_sections	RU_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/RU_1uM_3.fastp.json
fastp	all_sections	HSC_D12_DMSO_1_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_DMSO_1_tech.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_100nM_1_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_100nM_1_tech.fastp.json
fastp	all_sections	RU_1uM_plus_TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/RU_1uM_plus_TA_100nM_3.fastp.json
fastp	all_sections	TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/TA_100nM_3.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_100nM_1_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_100nM_1_bio.fastp.json
fastp	all_sections	HSC_D12_TA_100nM_2_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_100nM_2_tech.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_1uM_3_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_1uM_3_bio.fastp.json
fastp	all_sections	HSC_D12_TA_100nM_3_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_100nM_3_bio.fastp.json
fastp	all_sections	HSC_D12_DMSO_1_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_DMSO_1_bio.fastp.json
fastp	all_sections	HSC_D12_DMSO_3_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_DMSO_3_tech.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_2_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_2_bio.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_plus_TA_100nM_3_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_plus_TA_100nM_3_tech.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_1_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_1_tech.fastp.json
fastp	all_sections	HSC_D12_TA_1uM_1_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_1uM_1_tech.fastp.json
fastp	all_sections	HSC_D12_RU_1uM_2_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_RU_1uM_2_tech.fastp.json
fastp	all_sections	HSC_D12_TA_1uM_3_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_1uM_3_tech.fastp.json
fastp	all_sections	DMSO_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/DMSO_3.fastp.json
fastp	all_sections	HSC_D12_DMSO_3_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_DMSO_3_bio.fastp.json
fastp	all_sections	TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/TA_100nM_1.fastp.json
fastp	all_sections	HSC_D12_TA_100nM_3_tech	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_100nM_3_tech.fastp.json
fastp	all_sections	HSC_D12_TA_100nM_1_bio	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/trimming/HSC_D12_TA_100nM_1_bio.fastp.json
Picard	InsertSizeMetrics	DMSO_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-DMSO_1.tsv
Picard	InsertSizeMetrics	RU_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-RU_1uM_3.tsv
Picard	InsertSizeMetrics	DMSO_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-DMSO_3.tsv
Picard	InsertSizeMetrics	TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-TA_100nM_3.tsv
Picard	InsertSizeMetrics	RU_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-RU_1uM_2.tsv
Picard	InsertSizeMetrics	TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-TA_100nM_2.tsv
Picard	InsertSizeMetrics	RU_1uM_plus_TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-RU_1uM_plus_TA_100nM_2.tsv
Picard	InsertSizeMetrics	RU_1uM_plus_TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-RU_1uM_plus_TA_1uM_3.tsv
Picard	InsertSizeMetrics	RU_1uM_plus_TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-RU_1uM_plus_TA_100nM_3.tsv
Picard	InsertSizeMetrics	TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-TA_1uM_3.tsv
Picard	InsertSizeMetrics	RU_1uM_plus_TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-RU_1uM_plus_TA_1uM_2.tsv
Picard	InsertSizeMetrics	RU_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-RU_1uM_1.tsv
Picard	InsertSizeMetrics	TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-TA_100nM_1.tsv
Picard	InsertSizeMetrics	RU_1uM_plus_TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-RU_1uM_plus_TA_100nM_1.tsv
Picard	InsertSizeMetrics	RU_1uM_plus_TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-RU_1uM_plus_TA_1uM_1.tsv
Picard	InsertSizeMetrics	DMSO_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-DMSO_2.tsv
Picard	InsertSizeMetrics	TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-TA_1uM_1.tsv
Picard	InsertSizeMetrics	TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/InsertSizeMetrics/GRCh38-TA_1uM_2.tsv
Picard	DuplicationMetrics	RU_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-RU_1uM_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-RU_1uM_2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-TA_100nM_3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU_1uM_plus_TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-RU_1uM_plus_TA_1uM_2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-TA_100nM_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	DMSO_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-DMSO_2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU_1uM_plus_TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-RU_1uM_plus_TA_100nM_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	DMSO_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-DMSO_3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-TA_1uM_2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU_1uM_plus_TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-RU_1uM_plus_TA_1uM_3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU_1uM_plus_TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-RU_1uM_plus_TA_100nM_2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU_1uM_plus_TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-RU_1uM_plus_TA_1uM_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-TA_1uM_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-RU_1uM_3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-TA_1uM_3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	DMSO_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-DMSO_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-TA_100nM_2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU_1uM_plus_TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/markdup/GRCh38-RU_1uM_plus_TA_100nM_3.samtools-coordinate.metrics.txt
SamTools pre-sieve	stats	DMSO_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-DMSO_3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU_1uM_plus_TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-RU_1uM_plus_TA_100nM_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU_1uM_plus_TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-RU_1uM_plus_TA_100nM_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	DMSO_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-DMSO_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-TA_100nM_3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-RU_1uM_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-TA_1uM_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-TA_100nM_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-TA_1uM_3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-TA_100nM_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU_1uM_plus_TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-RU_1uM_plus_TA_1uM_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU_1uM_plus_TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-RU_1uM_plus_TA_100nM_3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU_1uM_plus_TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-RU_1uM_plus_TA_1uM_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-RU_1uM_3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-TA_1uM_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	DMSO_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-DMSO_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-RU_1uM_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU_1uM_plus_TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/bwa-mem2/GRCh38-RU_1uM_plus_TA_1uM_3.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-TA_100nM_2.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	RU_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-RU_1uM_3.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	RU_1uM_plus_TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-RU_1uM_plus_TA_100nM_2.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-TA_100nM_1.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-TA_1uM_2.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	DMSO_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-DMSO_3.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	RU_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-RU_1uM_2.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-TA_100nM_3.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-TA_1uM_1.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-TA_1uM_3.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	RU_1uM_plus_TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-RU_1uM_plus_TA_100nM_3.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	RU_1uM_plus_TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-RU_1uM_plus_TA_1uM_1.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	RU_1uM_plus_TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-RU_1uM_plus_TA_1uM_3.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	RU_1uM_plus_TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-RU_1uM_plus_TA_100nM_1.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	DMSO_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-DMSO_1.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	RU_1uM_plus_TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-RU_1uM_plus_TA_1uM_2.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	DMSO_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-DMSO_2.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	RU_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/samtools_stats/final_bam/GRCh38-RU_1uM_1.samtools-coordinate.samtools_stats.txt
deepTools	plotPCA	GRCh38	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/plotPCA/GRCh38.tsv
deepTools	plotFingerprint	GRCh38	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/qc/plotFingerprint/GRCh38.tsv
mtnucratio	all_sections	RU_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-RU_1uM_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-TA_1uM_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-RU_1uM_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU_1uM_plus_TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-RU_1uM_plus_TA_100nM_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-TA_100nM_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-RU_1uM_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-TA_100nM_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU_1uM_plus_TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-RU_1uM_plus_TA_1uM_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-TA_1uM_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU_1uM_plus_TA_100nM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-RU_1uM_plus_TA_100nM_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA_1uM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-TA_1uM_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	DMSO_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-DMSO_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	DMSO_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-DMSO_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU_1uM_plus_TA_100nM_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-RU_1uM_plus_TA_100nM_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU_1uM_plus_TA_1uM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-RU_1uM_plus_TA_1uM_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA_100nM_3	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-TA_100nM_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	DMSO_2	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-DMSO_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU_1uM_plus_TA_1uM_1	/ceph/rimlsfnwi/data/moldevbio/share_moldevbio/ghe_2022/results/bwa-mem2/GRCh38-RU_1uM_plus_TA_1uM_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json