Module	Section	Sample Name	Source
fastp	all_sections	HSCD12_DMSO_2bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_DMSO_2bio.fastp.json
fastp	all_sections	HSCD12_RU1uMTA1uM_2bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA1uM_2bio.fastp.json
fastp	all_sections	HSCD12_TA100nM_2bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA100nM_2bio.fastp.json
fastp	all_sections	HSCD12_RU1uMTA100nM_3bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA100nM_3bio.fastp.json
fastp	all_sections	HSCD12_RU1uM_3bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uM_3bio.fastp.json
fastp	all_sections	HSCD12_TA1uM_1bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA1uM_1bio.fastp.json
fastp	all_sections	RU1uMTA100nM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/RU1uMTA100nM_1.fastp.json
fastp	all_sections	TA100nM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/TA100nM_1.fastp.json
fastp	all_sections	TA1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/TA1uM_2.fastp.json
fastp	all_sections	RU1uMTA100nM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/RU1uMTA100nM_2.fastp.json
fastp	all_sections	HSCD12_RU1uMTA100nM_1tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA100nM_1tec.fastp.json
fastp	all_sections	NP_Day12_supernatant_DMSO_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/NP_Day12_supernatant_DMSO_2.fastp.json
fastp	all_sections	HSCD12_RU1uMTA1uM_1bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA1uM_1bio.fastp.json
fastp	all_sections	RU1uMTA1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/RU1uMTA1uM_2.fastp.json
fastp	all_sections	HSCD12_RU1uMTA1uM_3bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA1uM_3bio.fastp.json
fastp	all_sections	HSCD12_RU1uM_2bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uM_2bio.fastp.json
fastp	all_sections	NP_Day12_supernatant_TA_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/NP_Day12_supernatant_TA_3.fastp.json
fastp	all_sections	TA100nM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/TA100nM_2.fastp.json
fastp	all_sections	HSCD12_RU1uMTA100nM_3tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA100nM_3tec.fastp.json
fastp	all_sections	HSCD12_RU1uM_1bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uM_1bio.fastp.json
fastp	all_sections	RU1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/RU1uM_3.fastp.json
fastp	all_sections	TA100nM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/TA100nM_3.fastp.json
fastp	all_sections	DMSO_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/DMSO_2.fastp.json
fastp	all_sections	DMSO_4	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/DMSO_4.fastp.json
fastp	all_sections	HSCD12_TA100nM_3tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA100nM_3tec.fastp.json
fastp	all_sections	HSCD12_DMSO_2tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_DMSO_2tec.fastp.json
fastp	all_sections	HSCD12_TA100nM_1tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA100nM_1tec.fastp.json
fastp	all_sections	DMSO_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/DMSO_1.fastp.json
fastp	all_sections	HSCD12_RU1uMTA1uM_1tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA1uM_1tec.fastp.json
fastp	all_sections	HSCD12_RU1uMTA100nM_2bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA100nM_2bio.fastp.json
fastp	all_sections	HSCD12_TA100nM_1bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA100nM_1bio.fastp.json
fastp	all_sections	DMSO_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/DMSO_3.fastp.json
fastp	all_sections	TA1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/TA1uM_3.fastp.json
fastp	all_sections	HSCD12_DMSO_1tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_DMSO_1tec.fastp.json
fastp	all_sections	HSCD12_TA100nM_2tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA100nM_2tec.fastp.json
fastp	all_sections	HSCD12_RU1uM_3tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uM_3tec.fastp.json
fastp	all_sections	RU1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/RU1uM_1.fastp.json
fastp	all_sections	HSCD12_RU1uM_1tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uM_1tec.fastp.json
fastp	all_sections	HSCD12_TA1uM_2bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA1uM_2bio.fastp.json
fastp	all_sections	HSCD12_RU1uMTA1uM_3tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA1uM_3tec.fastp.json
fastp	all_sections	HSCD12_RU1uMTA100nM_2tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA100nM_2tec.fastp.json
fastp	all_sections	TA_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/TA_1.fastp.json
fastp	all_sections	NP_Day12_supernatant_DMSO_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/NP_Day12_supernatant_DMSO_3.fastp.json
fastp	all_sections	HSCD12_TA100nM_3bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA100nM_3bio.fastp.json
fastp	all_sections	HSCD12_DMSO_3bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_DMSO_3bio.fastp.json
fastp	all_sections	HSCD12_DMSO_3tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_DMSO_3tec.fastp.json
fastp	all_sections	RU1uMTA1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/RU1uMTA1uM_3.fastp.json
fastp	all_sections	HSCD12_RU1uM_2tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uM_2tec.fastp.json
fastp	all_sections	HSCD12_DMSO_1bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_DMSO_1bio.fastp.json
fastp	all_sections	NP_Day12_supernatant_DMSO_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/NP_Day12_supernatant_DMSO_1.fastp.json
fastp	all_sections	HSCD12_TA1uM_3bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA1uM_3bio.fastp.json
fastp	all_sections	RU1uMTA1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/RU1uMTA1uM_1.fastp.json
fastp	all_sections	HSCD12_TA1uM_2tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA1uM_2tec.fastp.json
fastp	all_sections	HSCD12_TA1uM_1tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA1uM_1tec.fastp.json
fastp	all_sections	RU1uMTA100nM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/RU1uMTA100nM_3.fastp.json
fastp	all_sections	TA1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/TA1uM_1.fastp.json
fastp	all_sections	NP_Day12_supernatant_TA_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/NP_Day12_supernatant_TA_2.fastp.json
fastp	all_sections	HSCD12_RU1uMTA100nM_1bio	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA100nM_1bio.fastp.json
fastp	all_sections	NP_Day12_supernatant_TA_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/NP_Day12_supernatant_TA_1.fastp.json
fastp	all_sections	RU1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/RU1uM_2.fastp.json
fastp	all_sections	HSCD12_RU1uMTA1uM_2tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_RU1uMTA1uM_2tec.fastp.json
fastp	all_sections	HSCD12_TA1uM_3tec	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/trimming/HSCD12_TA1uM_3tec.fastp.json
Picard	InsertSizeMetrics	RU1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-RU1uM_1.tsv
Picard	InsertSizeMetrics	TA100nM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-TA100nM_1.tsv
Picard	InsertSizeMetrics	RU1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-RU1uM_3.tsv
Picard	InsertSizeMetrics	TA100nM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-TA100nM_3.tsv
Picard	InsertSizeMetrics	RU1uMTA100nM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-RU1uMTA100nM_3.tsv
Picard	InsertSizeMetrics	RU1uMTA1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-RU1uMTA1uM_3.tsv
Picard	InsertSizeMetrics	DMSO_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-DMSO_3.tsv
Picard	InsertSizeMetrics	DMSO_4	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-DMSO_4.tsv
Picard	InsertSizeMetrics	TA_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-TA_1.tsv
Picard	InsertSizeMetrics	DMSO_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-DMSO_2.tsv
Picard	InsertSizeMetrics	RU1uMTA1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-RU1uMTA1uM_1.tsv
Picard	InsertSizeMetrics	RU1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-RU1uM_2.tsv
Picard	InsertSizeMetrics	TA1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-TA1uM_2.tsv
Picard	InsertSizeMetrics	RU1uMTA100nM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-RU1uMTA100nM_1.tsv
Picard	InsertSizeMetrics	RU1uMTA100nM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-RU1uMTA100nM_2.tsv
Picard	InsertSizeMetrics	TA1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-TA1uM_1.tsv
Picard	InsertSizeMetrics	TA100nM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-TA100nM_2.tsv
Picard	InsertSizeMetrics	TA1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-TA1uM_3.tsv
Picard	InsertSizeMetrics	RU1uMTA1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-RU1uMTA1uM_2.tsv
Picard	InsertSizeMetrics	DMSO_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/InsertSizeMetrics/GRCh38.p13-DMSO_1.tsv
Picard	DuplicationMetrics	RU1uMTA100nM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-RU1uMTA100nM_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-TA_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	DMSO_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-DMSO_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU1uMTA100nM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-RU1uMTA100nM_3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-RU1uM_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-TA1uM_3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU1uMTA1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-RU1uMTA1uM_3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU1uMTA1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-RU1uMTA1uM_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-RU1uM_3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-RU1uM_2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	DMSO_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-DMSO_3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	DMSO_4	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-DMSO_4.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU1uMTA1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-RU1uMTA1uM_2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	DMSO_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-DMSO_2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-TA1uM_2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA100nM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-TA100nM_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA100nM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-TA100nM_2.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-TA1uM_1.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	TA100nM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-TA100nM_3.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	RU1uMTA100nM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/markdup/GRCh38.p13-RU1uMTA100nM_2.samtools-coordinate.metrics.txt
SamTools pre-sieve	stats	TA100nM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-TA100nM_3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	DMSO_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-DMSO_3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-RU1uM_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	DMSO_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-DMSO_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU1uMTA1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-RU1uMTA1uM_3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-RU1uM_3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-TA1uM_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-TA1uM_3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA100nM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-TA100nM_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU1uMTA100nM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-RU1uMTA100nM_3.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU1uMTA1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-RU1uMTA1uM_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU1uMTA100nM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-RU1uMTA100nM_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU1uMTA1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-RU1uMTA1uM_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA100nM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-TA100nM_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU1uMTA100nM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-RU1uMTA100nM_2.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	RU1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-RU1uM_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-TA_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	TA1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-TA1uM_1.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	DMSO_4	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-DMSO_4.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	DMSO_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/samtools_stats/star/GRCh38.p13-DMSO_1.samtools-coordinate.samtools_stats.txt
deepTools	plotPCA	GRCh38.p13	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/plotPCA/GRCh38.p13.tsv
deepTools	plotFingerprint	GRCh38.p13	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/plotFingerprint/GRCh38.p13.tsv
Strandedness	infer_experiment	RU1uMTA100nM_2.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-RU1uMTA100nM_2.strandedness.txt
Strandedness	infer_experiment	DMSO_3.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-DMSO_3.strandedness.txt
Strandedness	infer_experiment	RU1uM_1.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-RU1uM_1.strandedness.txt
Strandedness	infer_experiment	RU1uMTA1uM_1.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-RU1uMTA1uM_1.strandedness.txt
Strandedness	infer_experiment	TA1uM_3.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-TA1uM_3.strandedness.txt
Strandedness	infer_experiment	RU1uM_2.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-RU1uM_2.strandedness.txt
Strandedness	infer_experiment	RU1uMTA100nM_1.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-RU1uMTA100nM_1.strandedness.txt
Strandedness	infer_experiment	TA100nM_3.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-TA100nM_3.strandedness.txt
Strandedness	infer_experiment	TA1uM_1.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-TA1uM_1.strandedness.txt
Strandedness	infer_experiment	DMSO_1.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-DMSO_1.strandedness.txt
Strandedness	infer_experiment	DMSO_2.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-DMSO_2.strandedness.txt
Strandedness	infer_experiment	RU1uM_3.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-RU1uM_3.strandedness.txt
Strandedness	infer_experiment	TA100nM_1.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-TA100nM_1.strandedness.txt
Strandedness	infer_experiment	RU1uMTA100nM_3.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-RU1uMTA100nM_3.strandedness.txt
Strandedness	infer_experiment	TA_1.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-TA_1.strandedness.txt
Strandedness	infer_experiment	DMSO_4.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-DMSO_4.strandedness.txt
Strandedness	infer_experiment	TA1uM_2.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-TA1uM_2.strandedness.txt
Strandedness	infer_experiment	RU1uMTA1uM_2.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-RU1uMTA1uM_2.strandedness.txt
Strandedness	infer_experiment	TA100nM_2.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-TA100nM_2.strandedness.txt
Strandedness	infer_experiment	RU1uMTA1uM_3.strandedness	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/qc/strandedness/GRCh38.p13-RU1uMTA1uM_3.strandedness.txt
mtnucratio	all_sections	TA1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-TA1uM_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-TA1uM_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU1uMTA100nM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-RU1uMTA100nM_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA100nM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-TA100nM_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	DMSO_4	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-DMSO_4.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU1uMTA1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-RU1uMTA1uM_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU1uMTA1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-RU1uMTA1uM_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	DMSO_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-DMSO_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU1uMTA100nM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-RU1uMTA100nM_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-TA_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU1uM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-RU1uM_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA100nM_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-TA100nM_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-TA1uM_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	TA100nM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-TA100nM_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	DMSO_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-DMSO_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-RU1uM_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	DMSO_1	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-DMSO_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU1uMTA1uM_3	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-RU1uMTA1uM_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU1uMTA100nM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-RU1uMTA100nM_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	RU1uM_2	/ceph/rimlsfnwi/data/moldevbio/heeringen/slrinzema/ghe/2023_s2s_run/results/star/GRCh38.p13-RU1uM_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json