cellranger  (cellranger-6.1.2)
Copyright (c) 2021 10x Genomics, Inc.  All rights reserved.
-------------------------------------------------------------------------------
Tue Apr 19 17:37:26 CEST 2022

=====================================================================
System Info
uname -a
---------------------------------------------------------------------
Linux cn106 5.13.0-35-generic #40~20.04.1-Ubuntu SMP Mon Mar 7 09:18:32 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
=====================================================================

=====================================================================
Linux Distro
cat /etc/*-release | sort -u
---------------------------------------------------------------------
BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/"
DISTRIB_CODENAME=focal
DISTRIB_DESCRIPTION="Ubuntu 20.04.4 LTS"
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=20.04
HOME_URL="https://www.ubuntu.com/"
ID=ubuntu
ID_LIKE=debian
NAME="Ubuntu"
PRETTY_NAME="Ubuntu 20.04.4 LTS"
PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy"
SUPPORT_URL="https://help.ubuntu.com/"
UBUNTU_CODENAME=focal
VERSION="20.04.4 LTS (Focal Fossa)"
VERSION_CODENAME=focal
VERSION_ID="20.04"
=====================================================================

=====================================================================
Kernel Build
cat /proc/version
---------------------------------------------------------------------
Linux version 5.13.0-35-generic (buildd@ubuntu) (gcc (Ubuntu 9.3.0-17ubuntu1~20.04) 9.3.0, GNU ld (GNU Binutils for Ubuntu) 2.34) #40~20.04.1-Ubuntu SMP Mon Mar 7 09:18:32 UTC 2022
=====================================================================

=====================================================================
glibc version
ldd --version | head -n 1
---------------------------------------------------------------------
ldd (Ubuntu GLIBC 2.31-0ubuntu9.7) 2.31
=====================================================================

=====================================================================
CPU Model
grep -m 1 'model name' /proc/cpuinfo | cut -d ':' -f 2 | sed 's/^[ \t]*//'
---------------------------------------------------------------------
AMD EPYC 7452 32-Core Processor
=====================================================================

=====================================================================
CPU Sockets
grep 'physical id' /proc/cpuinfo | sort -u | wc -l
---------------------------------------------------------------------
1
=====================================================================

=====================================================================
CPU Cores
grep -c processor /proc/cpuinfo
---------------------------------------------------------------------
64
=====================================================================

=====================================================================
CPU Support
grep -m 1 'flags' /proc/cpuinfo | cut -d ':' -f 2 | sed 's/^\s*//'
---------------------------------------------------------------------
fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq monitor ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm cmp_legacy svm extapic cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs skinit wdt tce topoext perfctr_core perfctr_nb bpext perfctr_llc mwaitx cpb cat_l3 cdp_l3 hw_pstate ssbd mba ibrs ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 cqm rdt_a rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local clzero irperf xsaveerptr rdpru wbnoinvd amd_ppin arat npt lbrv svm_lock nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold avic v_vmsave_vmload vgif v_spec_ctrl umip rdpid overflow_recov succor smca sme sev sev_es
=====================================================================

=====================================================================
Memory Total
grep MemTotal /proc/meminfo | cut -d ':' -f 2 | sed 's/^[ \t]*//'
---------------------------------------------------------------------
1056433092 kB
=====================================================================

=====================================================================
Disk Space
df -Ph | awk '{print $2, $3, $4}'
---------------------------------------------------------------------
Size Used Avail
504G 0 504G
101G 4.8M 101G
60G 41G 17G
504G 12M 504G
5.0M 0 5.0M
504G 0 504G
21G 2.9G 17G
15G 178M 15G
15G 41M 15G
975M 5.3M 969M
118G 45G 68G
36T 9.2T 26T
197G 80G 114G
2.0T 967G 1.1T
197G 69G 125G
101G 4.0K 101G
546T 528T 19T
590G 379G 182G
196G 137G 50G
197G 91G 103G
197G 73G 121G
197G 72G 122G
197G 87G 107G
197G 72G 121G
197G 100G 94G
197G 82G 112G
197G 68G 126G
101G 0 101G
101G 4.0K 101G
101G 0 101G
197G 101G 93G
197G 94G 99G
393G 1.1G 372G
101G 0 101G
197G 94G 99G
197G 94G 100G
101G 0 101G
197G 82G 112G
101G 0 101G
101G 0 101G
197G 97G 96G
197G 111G 83G
197G 83G 111G
101G 0 101G
197G 92G 101G
101G 0 101G
101G 0 101G
197G 86G 108G
101G 0 101G
197G 91G 103G
197G 111G 83G
101G 0 101G
101G 0 101G
101G 0 101G
197G 47G 147G
101G 0 101G
=====================================================================

=====================================================================
Filesystem Options
mount | cut -d ' ' -f 5,6
---------------------------------------------------------------------
sysfs (rw,nosuid,nodev,noexec,relatime)
proc (rw,nosuid,nodev,noexec,relatime)
devtmpfs (rw,nosuid,noexec,relatime,size=528161696k,nr_inodes=132040424,mode=755,inode64)
devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)
tmpfs (rw,nosuid,nodev,noexec,relatime,size=105643312k,mode=755,inode64)
ext4 (rw,relatime,errors=remount-ro)
securityfs (rw,nosuid,nodev,noexec,relatime)
tmpfs (rw,nosuid,nodev,inode64)
tmpfs (rw,nosuid,nodev,noexec,relatime,size=5120k,inode64)
tmpfs (ro,nosuid,nodev,noexec,mode=755,inode64)
cgroup2 (rw,nosuid,nodev,noexec,relatime,nsdelegate)
cgroup (rw,nosuid,nodev,noexec,relatime,xattr,name=systemd)
pstore (rw,nosuid,nodev,noexec,relatime)
efivarfs (rw,nosuid,nodev,noexec,relatime)
bpf (rw,nosuid,nodev,noexec,relatime,mode=700)
cgroup (rw,nosuid,nodev,noexec,relatime,hugetlb)
cgroup (rw,nosuid,nodev,noexec,relatime,rdma)
cgroup (rw,nosuid,nodev,noexec,relatime,net_cls,net_prio)
cgroup (rw,nosuid,nodev,noexec,relatime,memory)
cgroup (rw,nosuid,nodev,noexec,relatime,pids)
cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)
cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)
cgroup (rw,nosuid,nodev,noexec,relatime,misc)
cgroup (rw,nosuid,nodev,noexec,relatime,devices)
cgroup (rw,nosuid,nodev,noexec,relatime,freezer)
cgroup (rw,nosuid,nodev,noexec,relatime,blkio)
cgroup (rw,nosuid,nodev,noexec,relatime,perf_event)
autofs (rw,relatime,fd=28,pgrp=1,timeout=0,minproto=5,maxproto=5,direct,pipe_ino=84998)
hugetlbfs (rw,relatime,pagesize=2M)
mqueue (rw,nosuid,nodev,noexec,relatime)
debugfs (rw,nosuid,nodev,noexec,relatime)
tracefs (rw,nosuid,nodev,noexec,relatime)
rpc_pipefs (rw,relatime)
fusectl (rw,nosuid,nodev,noexec,relatime)
configfs (rw,nosuid,nodev,noexec,relatime)
ext4 (rw,relatime)
ext4 (rw,relatime)
ext4 (rw,relatime)
vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)
ext4 (rw,relatime)
ext4 (rw,relatime)
autofs (rw,relatime,fd=7,pgrp=2073,timeout=0,minproto=5,maxproto=5,indirect,pipe_ino=97001)
autofs (rw,relatime,fd=13,pgrp=2073,timeout=0,minproto=5,maxproto=5,indirect,pipe_ino=102497)
autofs (rw,relatime,fd=19,pgrp=2073,timeout=0,minproto=5,maxproto=5,indirect,pipe_ino=31637)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.30.206,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.30.206)
nfs4 (rw,nosuid,relatime,vers=4.2,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,clientaddr=131.174.136.191,local_lock=none,addr=131.174.136.116)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=29280,gid=29280,inode64)
ceph (rw,noatime,name=cn106,secret=<hidden>,acl)
binfmt_misc (rw,nosuid,nodev,noexec,relatime)
nfs4 (rw,nosuid,relatime,vers=4.2,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,clientaddr=131.174.136.191,local_lock=none,addr=131.174.30.46)
nfs4 (ro,nosuid,relatime,vers=4.2,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,clientaddr=131.174.136.191,local_lock=none,addr=131.174.30.46)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.30.206,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.30.206)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.30.206,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.30.206)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.30.206,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.30.206)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=13317,gid=13317,inode64)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=40205,gid=40205,inode64)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=30891,gid=30891,inode64)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.30.206,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.30.206)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.30.206,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.30.206)
nfs4 (rw,nosuid,relatime,vers=4.2,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,clientaddr=131.174.136.191,local_lock=none,addr=131.174.136.116)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=30449,gid=30449,inode64)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.30.206,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.30.206)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.30.206,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.30.206)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=14752,gid=14752,inode64)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=26052,gid=26052,inode64)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=26181,gid=26181,inode64)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.30.206,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.30.206)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=30841,gid=30841,inode64)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=27598,gid=27598,inode64)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=37966,gid=37966,inode64)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.30.206,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.30.206)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=25850,gid=25850,inode64)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.16.142,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.16.142)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=28163,gid=28163,inode64)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=37980,gid=37980,inode64)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=14868,gid=14868,inode64)
nfs (rw,nosuid,relatime,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=6,sec=sys,mountaddr=131.174.30.206,mountvers=3,mountport=656,mountproto=tcp,local_lock=none,addr=131.174.30.206)
tmpfs (rw,nosuid,nodev,relatime,size=105643308k,mode=700,uid=38666,gid=38666,inode64)
=====================================================================

=====================================================================
User Limits
bash -c 'ulimit -a'
---------------------------------------------------------------------
core file size          (blocks, -c) 0
data seg size           (kbytes, -d) unlimited
scheduling priority             (-e) 0
file size               (blocks, -f) unlimited
pending signals                 (-i) 4126263
max locked memory       (kbytes, -l) unlimited
max memory size         (kbytes, -m) unlimited
open files                      (-n) 4096
pipe size            (512 bytes, -p) 8
POSIX message queues     (bytes, -q) 819200
real-time priority              (-r) 0
stack size              (kbytes, -s) unlimited
cpu time               (seconds, -t) unlimited
max user processes              (-u) 4126263
virtual memory          (kbytes, -v) unlimited
file locks                      (-x) unlimited
=====================================================================

=====================================================================
User Limits (hard)
bash -c 'ulimit -aH'
---------------------------------------------------------------------
core file size          (blocks, -c) unlimited
data seg size           (kbytes, -d) unlimited
scheduling priority             (-e) 0
file size               (blocks, -f) unlimited
pending signals                 (-i) 4126263
max locked memory       (kbytes, -l) unlimited
max memory size         (kbytes, -m) unlimited
open files                      (-n) 4096
pipe size            (512 bytes, -p) 8
POSIX message queues     (bytes, -q) 819200
real-time priority              (-r) 0
stack size              (kbytes, -s) unlimited
cpu time               (seconds, -t) unlimited
max user processes              (-u) 4126263
virtual memory          (kbytes, -v) unlimited
file locks                      (-x) unlimited
=====================================================================

=====================================================================
Global File Limit
cat /proc/sys/fs/file-{max,nr}
---------------------------------------------------------------------
9223372036854775807
28320	0	9223372036854775807
=====================================================================

=====================================================================
Memory config
sysctl vm
---------------------------------------------------------------------
vm.admin_reserve_kbytes = 8192
vm.block_dump = 0
vm.compact_unevictable_allowed = 1
vm.compaction_proactiveness = 20
vm.dirty_background_bytes = 0
vm.dirty_background_ratio = 10
vm.dirty_bytes = 0
vm.dirty_expire_centisecs = 3000
vm.dirty_ratio = 20
vm.dirty_writeback_centisecs = 500
vm.dirtytime_expire_seconds = 43200
vm.extfrag_threshold = 500
vm.hugetlb_shm_group = 0
vm.laptop_mode = 0
vm.legacy_va_layout = 0
vm.lowmem_reserve_ratio = 256	256	32	0	0
vm.max_map_count = 65530
vm.memory_failure_early_kill = 0
vm.memory_failure_recovery = 1
vm.min_free_kbytes = 135168
vm.min_slab_ratio = 5
vm.min_unmapped_ratio = 1
vm.mmap_min_addr = 65536
vm.nr_hugepages = 0
vm.nr_hugepages_mempolicy = 0
vm.nr_overcommit_hugepages = 0
vm.numa_stat = 1
vm.numa_zonelist_order = Node
vm.oom_dump_tasks = 1
vm.oom_kill_allocating_task = 0
vm.overcommit_kbytes = 0
vm.overcommit_memory = 2
vm.overcommit_ratio = 90
vm.page-cluster = 3
vm.page_lock_unfairness = 5
vm.panic_on_oom = 0
vm.percpu_pagelist_fraction = 0
vm.stat_interval = 1
vm.swappiness = 1
vm.unprivileged_userfaultfd = 0
vm.user_reserve_kbytes = 131072
vm.vfs_cache_pressure = 100
vm.watermark_boost_factor = 0
vm.watermark_scale_factor = 10
vm.zone_reclaim_mode = 0
=====================================================================

=====================================================================
THP memory config
cat /sys/kernel/mm/*transparent_hugepage/enabled
---------------------------------------------------------------------
always [madvise] never
=====================================================================

=====================================================================
cgroups
cat /proc/self/cgroup
---------------------------------------------------------------------
13:perf_event:/
12:blkio:/user.slice
11:freezer:/
10:devices:/user.slice
9:misc:/
8:cpu,cpuacct:/user.slice
7:cpuset:/
6:pids:/user.slice/user-29280.slice/session-33.scope
5:memory:/user.slice/user-29280.slice/session-33.scope
4:net_cls,net_prio:/
3:rdma:/
2:hugetlb:/
1:name=systemd:/user.slice/user-29280.slice/session-33.scope
0::/user.slice/user-29280.slice/session-33.scope
=====================================================================

=====================================================================
cgroup mem stats
cat /sys/fs/cgroup/memory/user.slice/user-29280.slice/session-33.scope/memory.stat
---------------------------------------------------------------------
cache 142777528320
rss 6844416
rss_huge 0
shmem 0
mapped_file 2670592
dirty 28672
writeback 0
swap 16764928
pgpgin 2826105684
pgpgout 2791569833
pgfault 5897962929
pgmajfault 43435
inactive_anon 1605632
active_anon 19038208
inactive_file 103689322496
active_file 39088205824
unevictable 0
hierarchical_memory_limit 9223372036854771712
hierarchical_memsw_limit 9223372036854771712
total_cache 142777528320
total_rss 6844416
total_rss_huge 0
total_shmem 0
total_mapped_file 2670592
total_dirty 28672
total_writeback 0
total_swap 16764928
total_pgpgin 2826105684
total_pgpgout 2791569833
total_pgfault 5897962929
total_pgmajfault 43435
total_inactive_anon 1605632
total_active_anon 19038208
total_inactive_file 103689322496
total_active_file 39088205824
total_unevictable 0
=====================================================================

=====================================================================
memory soft limit
cat /sys/fs/cgroup/memory/user.slice/user-29280.slice/session-33.scope/memory.*soft_limit_in_bytes
---------------------------------------------------------------------
9223372036854771712
=====================================================================

=====================================================================
memory hard limit
cat /sys/fs/cgroup/memory/user.slice/user-29280.slice/session-33.scope/memory.limit_in_bytes
---------------------------------------------------------------------
9223372036854771712
=====================================================================

=====================================================================
memory swap limit
cat /sys/fs/cgroup/memory/user.slice/user-29280.slice/session-33.scope/memory.memsw.limit_in_bytes
---------------------------------------------------------------------
9223372036854771712
=====================================================================

=====================================================================
Container
[ -e /.dockerenv ] || [ -e /.dockerinit ] || [ ! -z "$container" ] || grep -m 1 -E 'docker|lxc' /proc/1/cgroup > /dev/null && echo 'Detected'
---------------------------------------------------------------------
=====================================================================

=====================================================================
init process
head -n 1 /proc/1/sched | cut -d ' ' -f 1
---------------------------------------------------------------------
systemd
=====================================================================

=====================================================================
SGE Submit
which qsub
---------------------------------------------------------------------
=====================================================================

=====================================================================
LSF Submit
which bsub
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BCL2FASTQ 1
which configureBclToFastq.pl
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BCL2FASTQ 2
which bcl2fastq
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Java
which java
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/usr/bin/java
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Java Version
java -version 2>&1 | cat
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openjdk version "11.0.14.1" 2022-02-08
OpenJDK Runtime Environment (build 11.0.14.1+1-Ubuntu-0ubuntu1.20.04)
OpenJDK 64-Bit Server VM (build 11.0.14.1+1-Ubuntu-0ubuntu1.20.04, mixed mode, sharing)
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10X Refdata
echo $TENX_REFDATA
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10X Refdata Version
cat $TENX_REFDATA/version
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qconf
which qconf
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slurm info
sinfo -O nodes,maxcpuspernode,memory,time
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NODES               MAX_CPUS_PER_NODE   MEMORY              TIMELIMIT           
12                  UNLIMITED           128000+             infinite            
2                   UNLIMITED           256000              7-00:00:00          
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MRP
mrp --version
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v4.0.6
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mrp templates
ls $(dirname $(dirname $(which mrp)))/jobmanagers/*.template
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