@include "rna/_assign_tags_stages.mro"

call INFER_GEM_WELL_THROUGHPUT(
    throughput            = null,
    chemistry_description = "Single Cell 5' R2-only",
    filtered_barcodes     = "/scratch/etanis/software/cellranger-6.1.2/dimitri_RNA_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ufc475ed619/files/filtered_barcodes.csv",
    filtered_feature_counts_matrix = "/scratch/etanis/software/cellranger-6.1.2/dimitri_RNA_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ufc475ed619/files/filtered_matrices_h5.h5",
    reference_path        = "/scratch/etanis/refs/10x_ref/refdata-gex-GRCh38-2020-A",
    barcode_summary_h5    = "/scratch/etanis/software/cellranger-6.1.2/dimitri_RNA_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ufc475ed616/files/barcode_summary.h5",
)
