@include "rna/_assign_tags_stages.mro"

call CALL_TAGS_JIBES(
    marginal_tag_calls_per_cell = null,
    marginal_tag_frequencies    = null,
    filtered_barcodes           = "/scratch/etanis/software/cellranger-6.1.2/dimitri_RNA_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ufc475ed619/files/filtered_barcodes.csv",
    filtered_feature_counts_matrix = "/scratch/etanis/software/cellranger-6.1.2/dimitri_RNA_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ufc475ed619/files/filtered_matrices_h5.h5",
    molecule_info               = "/scratch/etanis/software/cellranger-6.1.2/dimitri_RNA_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ufc475ed69e/files/molecule_info_non_multiplexed.h5",
    throughput                  = null,
    min_assignment_confidence   = null,
)
