@include "rna/_cr_ana_stages.mro"

call RUN_GRAPH_CLUSTERING_NG as RUN_GRAPH_CLUSTERING(
    matrix_h5          = "/scratch/etanis/software/cellranger-6.1.2/dimitri_RNA_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-ufc475ed6a9/files/preprocessed_matrix_h5.h5",
    pca_h5             = "/scratch/etanis/software/cellranger-6.1.2/dimitri_RNA_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-ufc475ed6b0/files/pca_h5.h5",
    num_neighbors      = null,
    neighbor_a         = null,
    neighbor_b         = null,
    num_bcs            = null,
    input_pcs          = null,
    balltree_leaf_size = null,
    similarity_type    = "nn",
    resolution         = null,
    random_seed        = null,
)
