@include "rna/_assign_tags.mro"

call _ASSIGN_TAGS(
    chemistry_description     = "Single Cell 5' R2-only",
    filtered_barcodes         = "/scratch/etanis/software/cellranger-6.1.2/dimitri/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u4c9f5ebc4e/files/filtered_barcodes.csv",
    filtered_feature_counts_matrix = "/scratch/etanis/software/cellranger-6.1.2/dimitri/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u4c9f5ebc4e/files/filtered_matrices_h5.h5",
    molecule_info             = "/scratch/etanis/software/cellranger-6.1.2/dimitri/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-u4c9f5ebcd9/files/molecule_info_non_multiplexed.h5",
    reference_path            = "/scratch/etanis/refs/10x_ref/refdata-gex-GRCh38-2020-A",
    barcode_summary_h5        = "/scratch/etanis/software/cellranger-6.1.2/dimitri/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-u4c9f5ebc4a/files/barcode_summary.h5",
    force_sample_barcodes     = null,
    multi_graph               = null,
    gem_well                  = 1,
    min_assignment_confidence = null,
)
