[stdout]
Number of fastq units = 3
Sampling reads from: Sample dimitri_RNA in "/scratch/etanis/ST-118/FASTQ/"
Sampling reads from: Sample dimitri_BCR in "/scratch/etanis/ST-118/FASTQ/"
Sampling reads from: Sample dimitri_TCR in "/scratch/etanis/ST-118/FASTQ/"
Potential chemistries: {ThreePrimeV2, ThreePrimeV3LT, ThreePrimeV3HT, FivePrimeR2, FivePrimePE, ThreePrimeV3, ThreePrimeV1}


Length based filtering for Sample dimitri_RNA in "/scratch/etanis/ST-118/FASTQ/"
LengthStats {
    median: {
        R2: 56,
        I1: 0,
        R1: 26,
    },
}
Compatible chemistries: {ThreePrimeV3LT, FivePrimeR2, ThreePrimeV3, ThreePrimeV3HT, ThreePrimeV2}
Result: {ThreePrimeV3HT, FivePrimeR2, FivePrimePE, ThreePrimeV3, ThreePrimeV1, ThreePrimeV2, ThreePrimeV3LT}


Length based filtering for Sample dimitri_BCR in "/scratch/etanis/ST-118/FASTQ/"
LengthStats {
    median: {
        R2: 56,
        I1: 0,
        R1: 26,
    },
}
Compatible chemistries: {ThreePrimeV3LT, FivePrimeR2, ThreePrimeV3, ThreePrimeV3HT, ThreePrimeV2}
Result: {FivePrimeR2, ThreePrimeV3HT, ThreePrimeV2, ThreePrimeV3, ThreePrimeV3LT}


Length based filtering for Sample dimitri_TCR in "/scratch/etanis/ST-118/FASTQ/"
LengthStats {
    median: {
        R2: 56,
        I1: 0,
        R1: 26,
    },
}
Compatible chemistries: {ThreePrimeV3LT, FivePrimeR2, ThreePrimeV3, ThreePrimeV3HT, ThreePrimeV2}
Result: {ThreePrimeV3HT, ThreePrimeV3, ThreePrimeV3LT, ThreePrimeV2, FivePrimeR2}
After length filter: {ThreePrimeV2, ThreePrimeV3LT, ThreePrimeV3HT, FivePrimeR2, ThreePrimeV3}


Whitelist based filtering for Sample dimitri_RNA in "/scratch/etanis/ST-118/FASTQ/"
{
    ThreePrimeV3LT: 0.00005,
    FivePrimeR2: 0.90472,
    ThreePrimeV3: 0.09808,
    ThreePrimeV3HT: 0.09808,
    ThreePrimeV2: 0.90472,
}
Compatible chemistries: {FivePrimeR2, ThreePrimeV2}
Result: {ThreePrimeV3HT, FivePrimeR2, ThreePrimeV3, ThreePrimeV2, ThreePrimeV3LT}


Whitelist based filtering for Sample dimitri_BCR in "/scratch/etanis/ST-118/FASTQ/"
{
    ThreePrimeV3LT: 0.00001,
    FivePrimeR2: 0.93841,
    ThreePrimeV3: 0.26308,
    ThreePrimeV3HT: 0.26308,
    ThreePrimeV2: 0.93841,
}
Compatible chemistries: {ThreePrimeV2, FivePrimeR2}
Result: {FivePrimeR2, ThreePrimeV2}


Whitelist based filtering for Sample dimitri_TCR in "/scratch/etanis/ST-118/FASTQ/"
{
    ThreePrimeV3LT: 0.00002,
    FivePrimeR2: 0.79368,
    ThreePrimeV3: 0.08273,
    ThreePrimeV3HT: 0.08273,
    ThreePrimeV2: 0.79368,
}
Compatible chemistries: {FivePrimeR2, ThreePrimeV2}
Result: {FivePrimeR2, ThreePrimeV2}
After whitelist filter: {FivePrimeR2, ThreePrimeV2}


Mapping based filtering for Sample dimitri_RNA in "/scratch/etanis/ST-118/FASTQ/"
MappingStats {
    total_reads: 100000,
    sense_reads: 2615,
    antisense_reads: 44762,
    conf_mapped_reads: 66052,
}
Compatible chemistries: {FivePrimeR2}
Result: {FivePrimeR2, ThreePrimeV2}


Mapping based filtering for Sample dimitri_BCR in "/scratch/etanis/ST-118/FASTQ/"
MappingStats {
    total_reads: 100000,
    sense_reads: 1590,
    antisense_reads: 44121,
    conf_mapped_reads: 51849,
}
Compatible chemistries: {FivePrimeR2}
Result: {FivePrimeR2}


Mapping based filtering for Sample dimitri_TCR in "/scratch/etanis/ST-118/FASTQ/"
MappingStats {
    total_reads: 100000,
    sense_reads: 10380,
    antisense_reads: 25413,
    conf_mapped_reads: 74379,
}
Compatible chemistries: {FivePrimeR2}
Result: {FivePrimeR2}
After mapping filter: {FivePrimeR2}
