@include "rna/_cr_lib_stages.mro"

call CHECK_BARCODES_COMPATIBILITY(
    chemistry_name              = "SC5P-R2",
    custom_chemistry_def        = null,
    sample_def                  = [
        {
            "fastq_id": null,
            "fastq_mode": "ILMN_BCL2FASTQ",
            "gem_group": null,
            "lanes": null,
            "library_type": "Gene Expression",
            "read_path": "/scratch/etanis/ST-118/FASTQ/",
            "sample_indices": ["any"],
            "sample_names": ["dimitri_RNA"],
            "subsample_rate": null,
            "target_set": null,
            "target_set_name": null,
        },
        {
            "fastq_id": null,
            "fastq_mode": "ILMN_BCL2FASTQ",
            "gem_group": null,
            "lanes": null,
            "library_type": "Gene Expression",
            "read_path": "/scratch/etanis/ST-118/FASTQ/",
            "sample_indices": ["any"],
            "sample_names": ["dimitri_BCR"],
            "subsample_rate": null,
            "target_set": null,
            "target_set_name": null,
        },
        {
            "fastq_id": null,
            "fastq_mode": "ILMN_BCL2FASTQ",
            "gem_group": null,
            "lanes": null,
            "library_type": "Gene Expression",
            "read_path": "/scratch/etanis/ST-118/FASTQ/",
            "sample_indices": ["any"],
            "sample_names": ["dimitri_TCR"],
            "subsample_rate": null,
            "target_set": null,
            "target_set_name": null,
        },
    ],
    enforce_library_concordance = true,
)
