[stdout]
2022-04-19 15:45:15 [cr_ana::stages::graph_clustering] computing k-nearest neighbors with k = 167
2022-04-19 15:45:15 [scan_rs::nn] constructing ball tree of 2039 points
2022-04-19 15:45:15 [scan_rs::nn] querying points for 167 neighbors
2022-04-19 15:45:15 [cr_ana::stages::graph_clustering] running louvain
2022-04-19 15:45:15 [cr_ana::louvain] louvain starting cpm score: -0.000514
2022-04-19 15:45:15 [cr_ana::louvain] louvain optimized in 9 iterations
2022-04-19 15:45:15 [cr_ana::louvain] louvain final cpm score: 0.553550
2022-04-19 15:45:15 [cr_ana::stages::graph_clustering] merging clusters
2022-04-19 15:45:15 [scan_rs::merge_clusters] computing DE params on 21689 x 835 matrix
2022-04-19 15:45:15 [scan_rs::merge_clusters] computing DE on 515 vs 320 cells
2022-04-19 15:45:16 [scan_rs::merge_clusters] computing DE params on 21689 x 566 matrix
2022-04-19 15:45:16 [scan_rs::merge_clusters] computing DE on 348 vs 218 cells
