@include "rna/_cr_vdj_stages.mro"

call CREATE_AIRR_TSV(
    contig_annotations = "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
    concat_ref_fasta   = "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
)
