@include "rna/_sc_vdj_assembler_stages.mro"

call SUMMARIZE_VDJ_REPORTS(
    sample_id         = "dimitri-multi",
    sample_desc       = "",
    barcode_whitelist = "737K-august-2016",
    summaries         = [
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a73e1/files/summary.json",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/REPORT_CONTIGS/fork0/join-ucc6a7a7cd9/files/summary.json",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/summary.json",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/summary.json",
    ],
    cell_barcodes     = "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
    clonotype_summary = "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
    barcode_support   = "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/barcode_support.csv",
    receptor          = "IG",
)
