@include "rna/_cr_vdj_stages.mro"

call ASSEMBLE_VDJ(
    bc_sorted_rna_reads      = [
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk00-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk01-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk02-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk03-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk04-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk05-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk06-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk07-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk08-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk09-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk10-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk11-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk12-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk13-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk14-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk15-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk16-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk17-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk18-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk19-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk20-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk21-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk22-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk23-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk24-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk25-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk26-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk27-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk28-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk29-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk30-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk31-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk32-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk33-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk34-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk35-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk36-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk37-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk38-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk39-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk40-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk41-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk42-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk43-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk44-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk45-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk46-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk47-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk48-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk49-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk50-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk51-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk52-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk53-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk54-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk55-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk56-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk57-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk58-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk59-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk60-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk61-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk62-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk63-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk64-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk65-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
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        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk92-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk93-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk94-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
    ],
    paired_end               = false,
    vdj_reference_path       = "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
    receptor                 = "TR",
    n50_n50_rpu              = 2159,
    npairs                   = 46574590,
    denovo                   = false,
    force_cells              = null,
    inner_enrichment_primers = null,
    total_read_pairs         = 58185432,
    corrected_bc_counts      = "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/corrected_barcode_counts.json",
)
